PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G41350.1
Common NameLOC102707465
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 617aa    MW: 68792.9 Da    PI: 5.4819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G41350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08500547347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E  +lvd+v+++G g W+ I r        Rt  ++k++w+++
     OB02G41350.1 500 AWTLSEVVKLVDGVARYGAGKWSEIRRLAFssySYRTSVDLKDKWRNL 547
                      7***************************999**99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.845493552IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-12494551IPR009057Homeodomain-like
SMARTSM007171.7E-8497550IPR001005SANT/Myb domain
CDDcd116605.93E-18499549No hitNo description
SuperFamilySSF466899.36E-15499552IPR009057Homeodomain-like
PfamPF002496.5E-6500547IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MEGCGSQDAM ENKSDDNDFD KNANSDPVVY QLVRVEGDGT LVPATEDEVL QFESFLHDEK  60
VDLPSIEDVS HVEEYFTNDC IKPDFGEGPS KLETADVQVH MLDVALEDDR LHTPDDSVVL  120
PSNCSAVHDQ ELDKLNTEQG GNNTAQQDNV STETTKSTVL NDLSSDKEKA DACSEPVNNT  180
SACQSVSGFT SSVPDFSILR GEVCLDNLTI RELQEAFRAT FGRQTTVKDK LWLKRRIAMG  240
LTNSCDVPSS GCVVKDYKVI GMGSKQEIAA VEGIPKMELE ATLVRDQVLN PGHQRDLPSS  300
FPYHSEEQQR SSKRLKRVPT DNDEPQVTIF TGQGTTKRIR KPTKRYIEEL SDIETNEPTG  360
RFFSPRKRPV YDEVLLRPRE APFHEVGSLG TTYPTRRDTL GGCSVHVPYV SRMRRGRPRS  420
NFIPLWDLEP SVECTEVPIA DAVNLEKEGE WGNHKNTKRE GEHVEAADSK KVQGQQAKDF  480
ANADVNPKIQ RGGKRKHHRA WTLSEVVKLV DGVARYGAGK WSEIRRLAFS SYSYRTSVDL  540
KDKWRNLIRA SQTQLSTEND GVCPRKSNPS TIPIPPSILL RVKELADMQP QVGDLRVPVK  600
FSGKSSMVVQ GKGSGFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G41350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703940.0AK070394.1 Oryza sativa Japonica Group cDNA clone:J023049B09, full insert sequence.
GenBankFJ9402130.0FJ940213.1 Oryza sativa Japonica Group clone KCS120F03 Myb transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647993.10.0PREDICTED: uncharacterized protein LOC102707465 isoform X1
TrEMBLJ3LHL80.0J3LHL8_ORYBR; Uncharacterized protein
STRINGOB02G41350.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-85TRF-like 6