PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G40970.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 303aa    MW: 33565 Da    PI: 4.5336
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G40970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57339.71.4e-12129219298
        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                   +fqr ws eDe+ +L +l   ++++g+    ++da++  + +  + +   ++ l  Ki  LK++++   +k   g++    k hd+  f+ls++iWg
  OB02G40970.1 129 AFQRSWSTEDEVRILEALAAHREEHGAL--PHVDALVASLAGIFDkAGCDRRGLQVKIGFLKRRYEAIAQK---GES--PGKGHDRRLFDLSQRIWG 218
                   79************************55..67888999998888625688999***************999...555..5799*************9 PP

        DUF573  98 s 98 
                   s
  OB02G40970.1 219 S 219
                   5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-18130218IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MVRSARPPPP PPEVSSSLET SSGSDSEDES EEEAIPTRPA PVVPNKGEES DSSDEEESED  60
EEEEEDMVKS SATKSRAPPP ENLEGEDSSE EEVDEPSESE KAPPLPLNPA PKQWAEENGP  120
KNSTPKKQAF QRSWSTEDEV RILEALAAHR EEHGALPHVD ALVASLAGIF DKAGCDRRGL  180
QVKIGFLKRR YEAIAQKGES PGKGHDRRLF DLSQRIWGSQ AANGATRGFD EMSELYPHLA  240
EEVKAWEVKH PGLFKRHFGR LDDNKARALD MKLKKQRLSE ITLEMRGSDL TEKVGKAIAE  300
LIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G40970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647975.21e-137PREDICTED: uncharacterized protein LOC102702631
TrEMBLJ3LHI00.0J3LHI0_ORYBR; Uncharacterized protein
STRINGOB02G40970.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.18e-08DNA-binding storekeeper protein-related transcriptional regulator