PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G40910.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 563aa    MW: 58762.6 Da    PI: 4.6379
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G40910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30320379159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  OB02G40910.1 320 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 379
                   58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-31305381IPR003657WRKY domain
PROSITE profilePS5081128.633315381IPR003657WRKY domain
SuperFamilySSF1182903.4E-27315381IPR003657WRKY domain
SMARTSM007741.4E-37320380IPR003657WRKY domain
PfamPF031061.0E-26321379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MSSKKKRAAI DLSLEAERRP EEGDGDGETS DGGAMAAKDV KQGEAVPKEE TGGEEKVVEV  60
VVDQGEDGSN EEIKYRSRQG EMMEEDKQPA AANDDDDGES DGAGASAEEK HIVAEAAGNG  120
DDDGGDSRTA MAQDELSEMQ EEMERMKEEN RMLRRVVDKT VRDYYELQMK LAAYQQQPAA  180
DEPKETEVFL SLGATAAASA GSGRFQEAKS KEQAPARRPS VGSDDTDDGK EDLGLSLSLG  240
ASSYEEDQKL EARHVDVVDG SAAAIGDGKA RPGYALLESS KVQGAPAGEL AAAGIASQSV  300
NPANRKTRVS VRVRCAGPTM NDGCQWRKYG QKVAKGNPCP RAYYRCTVAP GCPVRKQVQR  360
CLEDMSILVT TYEGTHNHPL PVGATAMAST TSAAATFMLL SSTSSSSSVS DAAGVSTVPS  420
SSYLSPYLLN SASHHSSSPL LMPGTSGSGG GGGMQHLNLF GHSSSSSLLA PQAPGSNKYP  480
WSLNHPPLGG GAGGGLGGGK RPFWSTGADD KPTPALPENV GAVVSDPNKF SAAIAAAINN  540
FMGKDGESSS SKWGVVESLP PHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22307383176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G40910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLJ3LHH40.0J3LHH4_ORYBR; Uncharacterized protein
STRINGOB02G40910.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.12e-49WRKY DNA-binding protein 9