PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G40600.1 | ||||||||
Common Name | LOC102722553 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24327 Da PI: 5.4198 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.4e-21 | 110 | 161 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s+y+GVr+++ +g+W+AeIrdp+ + +r++lg f+tae+Aa+a++ a+++++g+ OB02G40600.1 110 SKYRGVRRRP-WGKWAAEIRDPV----KgARVWLGPFDTAEDAARAYDVAALEFRGH 161 89********.**********75....44**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.91E-32 | 110 | 170 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-24 | 110 | 170 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-14 | 110 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 111 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.633 | 111 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-38 | 111 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVPRLERAGG GFHLPNSERE DSLFIRALIS VVSGDTAVPA LLPATAAACG GVGGELVLAA 60 GSSSSDEGEE GEEEECSGAP AAASATGGVE GGVGKRRQRR RGAAGDGEGS KYRGVRRRPW 120 GKWAAEIRDP VKGARVWLGP FDTAEDAARA YDVAALEFRG HRAKLNFPAS SPAQRPRSLP 180 VPDSLRENCG SNASSPVQHA PEHAPAARDK EIWDGLQEIM MLDDGTFWSM P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-23 | 108 | 168 | 2 | 63 | ATERF1 |
3gcc_A | 5e-23 | 108 | 168 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | KRRQRRR |
2 | 95 | 100 | RRQRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G40600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647961.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | J3LHE3 | 1e-163 | J3LHE3_ORYBR; Uncharacterized protein | ||||
STRING | OB02G40600.1 | 1e-164 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 1e-22 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102722553 |