PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G39890.1
Common NameLOC102709058
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 369aa    MW: 39396.6 Da    PI: 6.5061
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G39890.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEde+l +++++ G g+W++ ++  g++R++k+c++rw +yl
     OB02G39890.1 14 KGPWTTEEDEKLMEYIEKNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding482.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++   E + ++++++ lG++ W++Ia++++ gRt++++k++w+++l
     OB02G39890.1  67 RGKFNSAEKDTILQLHAALGNK-WSAIAKHLP-GRTDNEIKNYWNTHL 112
                      8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-25563IPR009057Homeodomain-like
PROSITE profilePS5129424.619965IPR017930Myb domain
SuperFamilySSF466895.99E-3111108IPR009057Homeodomain-like
SMARTSM007174.8E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-161461IPR001005SANT/Myb domain
CDDcd001674.59E-111661No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2664117IPR009057Homeodomain-like
SMARTSM007176.3E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.2566116IPR017930Myb domain
PfamPF002494.5E-1467112IPR001005SANT/Myb domain
CDDcd001671.24E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTTE EDEKLMEYIE KNGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF NSAEKDTILQ LHAALGNKWS AIAKHLPGRT DNEIKNYWNT HLKKDLIQKG  120
IDPTTHQPRT DFFAALPQLI ALANLRQLVG QLPWDDPAAA AAGLXXXXXX XXGQSLQALL  180
QLPPSAATSP GSGSIGGAMP AGDMEQMGAG LLSPPARTSS SALSPLPSPM STSSLSPLPS  240
PMSSTAFSPF PSSFMGSINV GRGSFVAGEF PTIQMHTSSV FDQPAAIVND VNQNQDYAAN  300
SGERGINGAP KTMLLSEDSL PPLADYPVIS NLGDVCTTPS CDGNITELPV FPDAFLNALM  360
RDCAPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G39890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050122e-90AP005012.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0627E03.
GenBankAP0149582e-90AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-90CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649059.10.0PREDICTED: myb-related protein MYBAS1-like
TrEMBLJ3LH720.0J3LH72_ORYBR; Uncharacterized protein
STRINGOB02G39890.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-91myb domain protein 93