PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G39310.1 | ||||||||
Common Name | LOC102704315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Nin-like | ||||||||
Protein Properties | Length: 223aa MW: 26128.8 Da PI: 7.0482 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.4 | 5e-27 | 106 | 155 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +++e +s+yF +pik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl OB02G39310.1 106 KPLTFELVSQYFCMPIKQAARELNVGLTLLKRRCRVLGIPRWPHRKMKSL 155 789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.337 | 88 | 175 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.2E-22 | 108 | 155 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEDRIFHEDD SLFQDLSFDF LQQDDALFST RHFCTSVSTQ GILLQDEPDA FFTGDILSIW 60 DEMEQGTYLS HQKSDKDSDE NAQKLEIGKA MELQRRRPSG HGSEAKPLTF ELVSQYFCMP 120 IKQAARELNV GLTLLKRRCR VLGIPRWPHR KMKSLDTLIR SVEEIGEQTG QLKDKARNAV 180 EMLQQKKKLI EQKPDVELDD WTKTLRQMYF KKNYKRRVLA IEK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G39310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649045.1 | 1e-166 | PREDICTED: protein RKD1-like | ||||
Swissprot | Q9M9U9 | 1e-35 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | J3LH14 | 1e-164 | J3LH14_ORYBR; Uncharacterized protein | ||||
STRING | OB02G39310.1 | 1e-165 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 1e-37 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102704315 |