PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G38920.1
Common NameLOC102717129
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 447aa    MW: 49070.7 Da    PI: 9.1916
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G38920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.73.9e-2361126171
       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   rk+ksL+ll+++f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  OB02G38920.1  61 RKQKSLGLLCSNFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRKAKNRYSWIG 126
                   79*****************999************...**..****************************98 PP
2E2F_TDP77.99.9e-25205285171
       E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                   rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL+++n iek     ++k+++rw g
  OB02G38920.1 205 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSMNFIEKiqqadSRKPAFRWLG 285
                   79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2557127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.91E-1660125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-2961126IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-2062126IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-22202286IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.5E-31205285IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.1E-20206285IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-12207286IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAAAAVMVAP PSSSTADAAV AGAGPALEAE AAVPAPALPR SQQPMLVEGR GPKLRDHAYS  60
RKQKSLGLLC SNFVALYNRD DVESIGLDDA ARRLGVERRR IYDIVNVLES VGILVRKAKN  120
RYSWIGFAGV PMALRELKER ALREKSGLAP LPVEDPSAAN MSDDEDEDKM GDVDGDTGSE  180
KLSQPVDNPS DKPGAPRCRL RSDHRKEKSL GLLTQNFVKL FLTMEVDTIS LDEAAKLLLG  240
EGHAENSMRT KVRRLYDIAN VLSSMNFIEK IQQADSRKPA FRWLGSPGKP KAENGVTIAL  300
PPPGKTMSNK RAFGTELTNI DMNRSKLDSA IPKKAKLTQS GGDILKDCKL SVQRQLRQGS  360
VGGFVYGPFH PAGARKQELD DGNKRQTDSA QDWESFAASF RPQYQNQALG DLFAHYVEAW  420
KSWYSEFAQG SSMMQQHFGM HVINQFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-37602773228Transcription factor E2F8
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Controls the timing of endocycle onset and inhibits endoreduplication. {ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11867638, ECO:0000269|PubMed:15649366, ECO:0000269|PubMed:18787127}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G38920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647865.10.0PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-105E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLJ3LGX50.0J3LGX5_ORYBR; Uncharacterized protein
STRINGOB02G38920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-106DP-E2F-like 1
Publications ? help Back to Top
  1. Chandran D, et al.
    Atypical E2F transcriptional repressor DEL1 acts at the intersection of plant growth and immunity by controlling the hormone salicylic acid.
    Cell Host Microbe, 2014. 15(4): p. 506-13
    [PMID:24721578]
  2. Wang Z, et al.
    Del1 Knockout Mice Developed More Severe Osteoarthritis Associated with Increased Susceptibility of Chondrocytes to Apoptosis.
    PLoS ONE, 2016. 11(8): p. e0160684
    [PMID:27505251]
  3. Heyman J,Polyn S,Eekhout T,De Veylder L
    Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1.
    Plant Physiol., 2017. 175(1): p. 303-313
    [PMID:28698355]