PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G38450.1
Common NameLOC102712332
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 258aa    MW: 28156.6 Da    PI: 4.9197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G38450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
     OB02G38450.1 14 KGPWTAEEDQKLVAFLLSNGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.82.6e-1870111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++eE++l +d+++qlG++ W++Ia++++ gRt++++k++w+++
     OB02G38450.1  70 LSEEEEKLVIDLHEQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      69*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-20563IPR009057Homeodomain-like
PROSITE profilePS5129414.908961IPR017930Myb domain
SuperFamilySSF466892.32E-2711108IPR009057Homeodomain-like
SMARTSM007171.0E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-131461IPR001005SANT/Myb domain
CDDcd001674.08E-91661No hitNo description
PROSITE profilePS5129427.85562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2564116IPR009057Homeodomain-like
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.1E-1670111IPR001005SANT/Myb domain
CDDcd001679.44E-1471112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRQPCCEKV GLKKGPWTAE EDQKLVAFLL SNGHCCWRLV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEEEEKLVID LHEQLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHRPAV SLAQPDGPDP LKQQRQQEPS VSGAGADDKE EEEEAATSAQ PPQVVDSSAS  180
SASAVSPSCS SSASASAATP GADVDVDWPD LFEVDGIMDI DWAGFLSASG DDGGCSAVGT  240
DMLFDHYSDV GFDQQVWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G38450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087090.0AK108709.1 Oryza sativa Japonica Group cDNA clone:002-150-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647848.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9C7U74e-84MYB20_ARATH; Transcription factor MYB20
TrEMBLJ3LGS80.0J3LGS8_ORYBR; Uncharacterized protein
STRINGOB02G38450.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.19e-85myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]