PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G37970.1 | ||||||||
Common Name | LOC102705407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 279aa MW: 28763.1 Da PI: 8.7456 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.4 | 1.8e-39 | 42 | 102 | 3 | 63 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k+sss OB02G37970.1 42 PEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRSSS 102 5789*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-33 | 34 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-33 | 44 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.497 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MQEFQSIPGL AGRLFGGAAA ADLRRAQAQQ GPASRCGGIP SPEAVKCPRC ESTNTKFCYY 60 NNYNLSQPRH FCKSCRRYWT KGGVLRNVPV GGGCRKSKRS SSSSSAPSAP STPTATDNAK 120 NQRRASASSP RSSSGGSGNT SPSAAAAAAN AATTPTTPAT PSSNTISVIN HATNPFPTDV 180 PPPAPIFADQ AAALASLFAP PPPPPLPVFS FTAQPKTEEG IASVLLAGQT DPVAPAVADM 240 TPFTSLDSGI FELGDVPPPA YWNAGSCWTD VPDPTVYLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G37970.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:11470159}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028132 | 0.0 | AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8. | |||
GenBank | AK061000 | 0.0 | AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence. | |||
GenBank | AK101321 | 0.0 | AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence. | |||
GenBank | AP005284 | 0.0 | AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 0.0 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647826.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.4-like | ||||
Swissprot | Q6Z345 | 1e-131 | DOF4_ORYSJ; Dof zinc finger protein 4 | ||||
TrEMBL | J3LGN0 | 0.0 | J3LGN0_ORYBR; Uncharacterized protein | ||||
STRING | OB02G37970.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6496 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 7e-34 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 102705407 |
Publications ? help Back to Top | |||
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