PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G37830.1 | ||||||||
Common Name | LOC102703007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 396aa MW: 43154.1 Da PI: 4.7605 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.1 | 6.4e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ +C++++ lC +C + H+ Ht++ OB02G37830.1 4 LCDFCGKQRSMVYCRSDSASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 22.5 | 2.4e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C+++ ++++ C + + lC++C ++H g H++++ OB02G37830.1 47 LCDRCVAQPASVRCLEENISLCQNCDWNGH-GaassaagHKRQT 89 7*****************************.5588889998876 PP | |||||||
3 | CCT | 64.5 | 3.1e-22 | 339 | 382 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ OB02G37830.1 339 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 382 899**************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.096 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.9E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.63E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.044 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.89E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.82 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 6.8E-17 | 339 | 381 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.408 | 339 | 381 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDALCDFCGK QRSMVYCRSD SASLCLSCDR NVHSANALSR RHTRTLLCDR CVAQPASVRC 60 LEENISLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFIM DIPVVAAEPN 120 CEDGINMMSI NDSGISNHCG APEDSSLLDM ASTSLMSDLP TGDKFKPLIG SSSGDGMNLL 180 PLNTDQPAEP VSTTPKAPCV TDKDMFNDGS VYEDFCVDDA DLTFENYEEL FGTSHIQTEQ 240 LFDDAGIDSY FEMKEVPADE SNEPKPMQPE CSNVASVDSG MSNLAARQAI SNISLSFSGL 300 TGESSAGDFQ DCGVSSMILM GEPPWHPPGP ESSSAGGSRD NALTRYKEKK KRRKFDKKIR 360 YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 352 | KKKRR |
2 | 348 | 353 | KKKRRK |
3 | 349 | 353 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G37830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB001888 | 0.0 | AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574. | |||
GenBank | AK071630 | 0.0 | AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence. | |||
GenBank | CT832279 | 0.0 | CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence. | |||
GenBank | CT832280 | 0.0 | CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence. | |||
GenBank | CT832281 | 0.0 | CT832281.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240J12, full insert sequence. | |||
GenBank | CT832282 | 0.0 | CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence. | |||
GenBank | EU605821 | 0.0 | EU605821.1 Oryza sativa Japonica Group isolate Az8 mRNA sequence. | |||
GenBank | EU605849 | 0.0 | EU605849.1 Oryza sativa Indica Group isolate Ba8 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006647819.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2 | ||||
Swissprot | Q9SSE5 | 1e-128 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | J3LGL6 | 0.0 | J3LGL6_ORYBR; Uncharacterized protein | ||||
STRING | OB02G37830.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 2e-95 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Entrez Gene | 102703007 |