PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G37830.1
Common NameLOC102703007
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 396aa    MW: 43154.1 Da    PI: 4.7605
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G37830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.4e-07445540
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   C+ +++++   +C++++  lC +C  + H+       Ht++
  OB02G37830.1  4 LCDFCGKQRSMVYCRSDSASLCLSCDRNVHSAnalsrrHTRT 45
                  7*****************************657888889876 PP

2zf-B_box22.52.4e-074789541
      zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                   C+++  ++++  C + +  lC++C  ++H g       H++++
  OB02G37830.1 47 LCDRCVAQPASVRCLEENISLCQNCDWNGH-GaassaagHKRQT 89
                  7*****************************.5588889998876 PP

3CCT64.53.1e-22339382144
           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   R++al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  OB02G37830.1 339 RDNALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 382
                   899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
SMARTSM003361.9E-10147IPR000315B-box-type zinc finger
CDDcd000212.63E-7447No hitNo description
PROSITE profilePS501199.0444390IPR000315B-box-type zinc finger
CDDcd000211.89E-54790No hitNo description
SMARTSM003360.824890IPR000315B-box-type zinc finger
PfamPF062036.8E-17339381IPR010402CCT domain
PROSITE profilePS5101715.408339381IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDALCDFCGK QRSMVYCRSD SASLCLSCDR NVHSANALSR RHTRTLLCDR CVAQPASVRC  60
LEENISLCQN CDWNGHGAAS SAAGHKRQTI NCYSGCPSSA ELSRIWSFIM DIPVVAAEPN  120
CEDGINMMSI NDSGISNHCG APEDSSLLDM ASTSLMSDLP TGDKFKPLIG SSSGDGMNLL  180
PLNTDQPAEP VSTTPKAPCV TDKDMFNDGS VYEDFCVDDA DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEVPADE SNEPKPMQPE CSNVASVDSG MSNLAARQAI SNISLSFSGL  300
TGESSAGDFQ DCGVSSMILM GEPPWHPPGP ESSSAGGSRD NALTRYKEKK KRRKFDKKIR  360
YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348352KKKRR
2348353KKKRRK
3349353KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G37830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0018880.0AB001888.1 Oryza sativa Japonica Group mRNA for zinc finger protein, complete cds, clone:S3574.
GenBankAK0716300.0AK071630.1 Oryza sativa Japonica Group cDNA clone:J023105D03, full insert sequence.
GenBankCT8322790.0CT832279.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228H16, full insert sequence.
GenBankCT8322800.0CT832280.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA228J16, full insert sequence.
GenBankCT8322810.0CT832281.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240J12, full insert sequence.
GenBankCT8322820.0CT832282.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209I20, full insert sequence.
GenBankEU6058210.0EU605821.1 Oryza sativa Japonica Group isolate Az8 mRNA sequence.
GenBankEU6058490.0EU605849.1 Oryza sativa Indica Group isolate Ba8 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647819.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-128COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLJ3LGL60.0J3LGL6_ORYBR; Uncharacterized protein
STRINGOB02G37830.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-95B-box type zinc finger protein with CCT domain