PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G36700.1
Common NameLOC102712052
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 88aa    MW: 10048.8 Da    PI: 7.9017
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G36700.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09451347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WTt   +l+ +a + +  +   +W  +ar +g g+t+ ++k ++  +
     OB02G36700.1  4 SWTTKQNKLFERALATYDRDtpdRWQNVARAVGGGKTADEVKRHYEEL 51
                     7*****************99*************************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.605156IPR017884SANT domain
SMARTSM007171.2E-7154IPR001005SANT/Myb domain
SuperFamilySSF466892.18E-12359IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-4455IPR009057Homeodomain-like
CDDcd001671.96E-4452No hitNo description
PfamPF002492.2E-6451IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSSWTTKQN KLFERALATY DRDTPDRWQN VARAVGGGKT ADEVKRHYEE LLKDLHHIES  60
AGNHQGSSGS SSSWGNANED QRRYHNFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-234881091RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G36700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647765.11e-60PREDICTED: protein RADIALIS-like 3
RefseqXP_015689596.11e-60PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB87e-24RADL1_ARATH; Protein RADIALIS-like 1
SwissprotQ6NNN04e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLJ3LGA33e-59J3LGA3_ORYBR; Uncharacterized protein
STRINGOB02G36700.15e-60(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-25RAD-like 6
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]