PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G35470.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 496aa    MW: 51936.5 Da    PI: 7.5583
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G35470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-1661105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE+ ++++a +++G   W++I +++g ++t+ q++s+ qk+
     OB02G35470.1  61 REKWTDEEHRRFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 105
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-1655109IPR009057Homeodomain-like
PROSITE profilePS5129420.84756110IPR017930Myb domain
TIGRFAMsTIGR015579.1E-1659108IPR006447Myb domain, plants
SMARTSM007177.4E-1360108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-961101IPR009057Homeodomain-like
PfamPF002497.7E-1461104IPR001005SANT/Myb domain
CDDcd001677.75E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEMACLQGNA MATDENGADD RAGGESTVDN LRSHLNYGDM DLSGEEHVPK ARKPYTITKQ  60
REKWTDEEHR RFLEALQLHG RAWRRIQEHI GTKTAVQIRS HAQKFFSKVV RESSGGSSGP  120
GGGAAAAAAA AIQIPPPRPK RKPAHPYPRK VDGAAKKHAL ALRQLEKPPS RMQSLSEHED  180
GSPTSVLTAA HIGTEGLGGG PSNNSSGSGS PAPSAAGSDA HVGGGGSRAS SVDREDGCLS  240
PSIPTAELAM QAPNTKMSIA TDAKKASSVA SVFRLFGKSV AVKDSEKEPN THSGHQQSGR  300
NIAACASAER AARSTLPCFA AAEGSSSNPW PSSMQQFLYF LPRSDGFAAQ PVMPWFSYNG  360
SLPCALFYPQ AAAPNLLCHR DSEEGAEFRA SQREGSLTGS NTASSVVLGS APAPAAAAQN  420
SDGAESRGQG NSRDSDAAAV APPRPSQCES SASVTVLQRG FVPYKRCAAE SELLPRSEAP  480
GGEEAVADCE LTRLCL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G35470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117260.0AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623484.10.0protein REVEILLE 1 isoform X2
TrEMBLJ3LFY00.0J3LFY0_ORYBR; Uncharacterized protein
STRINGOB02G35470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.18e-37MYB_related family protein