PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G35150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 353aa    MW: 38827.1 Da    PI: 7.7735
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G35150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC41.71.9e-13135160126
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkk 26 
                   +++pgrCrRtDGKkWRCsr+v++g+k
  OB02G35150.1 135 EPDPGRCRRTDGKKWRCSRDVVPGHK 160
                   699*********************98 PP
2QLQ50.27.9e-1871105337
           QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                   +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  OB02G35150.1  71 LTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 105
                   799******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-469105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.61970105IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-1071104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166716.478135179IPR014977WRC domain
PfamPF088799.8E-10136160IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGEEKEADSP QPPSKLPRLS AADPNAGMVT MAAPPPPVGL GLGLGLGGDS RGERDVEPSP  60
ASAPAHKATV LTFMQQQELE HQVLIYRYFA AGAPVPVHLV LPIWKSVASS SFGPHRFPSL  120
MGLGNLCFDY RSSMEPDPGR CRRTDGKKWR CSRDVVPGHK RGCCSASHSR METVIVVSVY  180
WYTEHDADHD NACFDIANYR YNNNDDGSGV LSALTSSSGS RGEGRDNPNI DSALDCHQLA  240
ELIGPGWRLQ QRLLARFPLE PDLSYRLDRK RKRQSVRSGF SVTFSTLYKA LALIKIELKL  300
EGAKQTLPEE CLHDDLVIPQ SHIDRRKLRV KAPLTCESPE ATGLYAAPFM LGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G35150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8347610.0CT834761.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA033I10, full insert sequence.
GenBankFJ5466940.0FJ546694.1 Oryza sativa Indica Group cultivar IR58 growth-regulating factor 10 (GRF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LFU80.0J3LFU8_ORYBR; Uncharacterized protein
STRINGOB02G35150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.19e-23growth-regulating factor 3