PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G34800.1
Common NameLOC102707280
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 610aa    MW: 63281.4 Da    PI: 8.751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G34800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0596118123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+k F r  nL+ H r H
  OB02G34800.1  96 FVCEVCNKGFQREQNLQLHRRGH 118
                   89*******************88 PP
2zf-C2H211.50.0009173195123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC +C+k++  +s+ k H + +
  OB02G34800.1 173 WKCDKCSKRYAVQSDWKAHSKIC 195
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.71E-795118No hitNo description
Gene3DG3DSA:3.30.160.608.5E-695118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004196118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09496118IPR007087Zinc finger, C2H2
PfamPF121714.0E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.71E-7168193No hitNo description
SMARTSM00355140173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HEDQIKPLFG QHQQQHHHQQ PPMVPSNATV AVSAAGSAAG  60
QAAPAAPPVK KKRTLPDPDA EVIALSPKTL LATNRFVCEV CNKGFQREQN LQLHRRGHNL  120
PWKLKQKNPA QAQRRRVYLC PEPTCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
RYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF CDALAQESAR LPPAGHLYGS  240
TSAANMAPSL SQVGSHLAST LQDARAGGHG HHASPDGLLR FGGSGGGGGM VSRLDHLLSS  300
SSAASAFRPL PPPPPQSSAP FLLGAGQGFG GDGDGNGPHH AFLQGKPFHG LMQLPDLQGN  360
GAGGPSPSNP GLYNLGYIAN SANSSGTSSH GHASQGQMTN TDQFSEGGGG GGGGSETSAT  420
ALFSAGGNFS GGDHHQVAPA GMYANDQAMM LLPQMSATAL LQKAAQMGSS TSANGAGASV  480
FGAFAGSSPQ SIPHGRSPAM VDQGQMHLQS LMNSLAGGGS ADHHGMFGSG SMIDPRLYDL  540
EQHEVKFSQR GGGGGDGDVT RDFLGVGGGS FMRGMSMARG EHHSGGGGDM GALEAEMKSA  600
SSSFNGGRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34169231365Zinc finger protein JACKDAW
5b3h_F2e-34169231365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G34800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647668.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_015688820.10.0PREDICTED: protein indeterminate-domain 4, chloroplastic-like
TrEMBLJ3LFR30.0J3LFR3_ORYBR; Uncharacterized protein
STRINGOB02G34800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-104indeterminate(ID)-domain 12