PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G33940.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 547aa    MW: 58139.4 Da    PI: 6.4215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G33940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-056986219
                  EETTTTEEESSHHHHHHH CS
       zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                  +C++Cgk F+++ +L  H
  OB02G33940.1 69 VCENCGKEFNSWKMLLDH 86
                  6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.53868101IPR007087Zinc finger, C2H2
SMARTSM003552606896IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.19E-8235258No hitNo description
PfamPF139123.1E-9236260IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242236263IPR007087Zinc finger, C2H2
SMARTSM003550.13236258IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
SuperFamilySSF576676.19E-8359386No hitNo description
PfamPF139121.7E-12363387IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349364386IPR007087Zinc finger, C2H2
SMARTSM003550.46364386IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280366386IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MMMTCSRLHM MVGAGGPRGG GPDLQSSPYD GGGGEPSEMM TGSPTTATTT TRHMYALRTN  60
PGRLRNCRVC ENCGKEFNSW KMLLDHGRCS FVEEDHLDGL PHSSAYHDCG DDGEDDGEDI  120
GLAPEWSKGK RSRRAKVMSV GTGSVSEVQP SAPSTEEEDL ANFLVMLSSS SSSRATQPIV  180
VDTDQESCAS ANKAEERSMI LVPQPISIAA PVMAQMTVIA PQVVPHHVPT VPRGMFECKA  240
CKKVFSSHQA LGGHRASHKK VKGCFAAKLE SNRNENQQQQ QHVAAAPQEN NKATTSHAIP  300
EIGTDASMLS PNVDADIKGK SAGIDEVVIA TPVSDMAMTM AVDNLAPALG PATVSPFKKK  360
GKVHECSICH RVFTSGQALG GHKRCHWLTS SSTDPLTKLQ PIAQDHAMVA AMCHQLTLGR  420
PIFDACDQRI LDLNIPTNPL TEARQQQAAG LNDGALCLNA AAAAASVYLQ SWTGHSNGSQ  480
VNKTTVTSSR VNDAAGDVAT EDEADSTSAK RAKIGDLKDM NVAGESMPWL QVGIGISSES  540
KEKSTQE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G33940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075592e-73AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050722e-73AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052892e-73AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149582e-73AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688992.10.0PREDICTED: uncharacterized protein LOC102720401
TrEMBLJ3LFH70.0J3LFH7_ORYBR; Uncharacterized protein
STRINGOB02G33940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-16C2H2 family protein