PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G32150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 622aa    MW: 67798.3 Da    PI: 7.2127
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G32150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.2e-2443144199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g  W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++
  OB02G32150.1  43 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RGDGG 135
                   89*****************************96555555..8************************************************..44899 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+++r+
  OB02G32150.1 136 ELHVGIRRA 144
                   9******97 PP
2Auxin_resp117.31.3e-38194277183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+
  OB02G32150.1 194 AARLASGGQAFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 277
                   6788999***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-3736146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-2939145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-2242143No hitNo description
PROSITE profilePS5086312.8343145IPR003340B3 DNA binding domain
SMARTSM010199.2E-2143145IPR003340B3 DNA binding domain
PfamPF023626.2E-2243144IPR003340B3 DNA binding domain
PfamPF065072.9E-33194277IPR010525Auxin response factor
PROSITE profilePS5174515.478536616IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MADPDTDEVF GRIRLVPFRA AEDGDVEDDG AAAGEEHEKP ASFAKTLTQS DANNGGGFSV  60
PRYCAETIFP RLDYAADPPV QTVVAKDVHG VAWNFRHIYR GTPRRHLLTT GWSTFVNQKK  120
LVAGDSIVFL RGDGGELHVG IRRAKRGFCA GGGGAEEASL PGWDQYGGLM RGNASPCAAA  180
KGRGKVRAED VVEAARLASG GQAFEVVYYP RASTPEFCVR AAAVRAAMRV QWCPGMRFKM  240
AFETEDSSRI SWFMGTVAGV QVADPIRWPQ SPWRLLQVTW DEPDLLQNVK RVSPWLVELV  300
SSMPAIHLSS FSPPRKKPRI PAYPEFPFEG QLLNPAFPPN PLAHGHHPHH HYHHNHPSFF  360
PFPDVIAPAG IQGARHAQFG PSLSDLHLTH LQSSLMYPGL RRPDHVGPTP IPPRISTDLT  420
MGGSQPPARD TVSCALSIGA KKPDDAKPPG LMLFGQRILT EQQQMSLSGS ASGTSPAAAG  480
NSSLNWNTEK GANASEGSGS GVIQNSPTDN TSSERLQWRL QWFRENSHVS ELGLEPGQCK  540
VFIESDTVGR NLDLSTVSSF EQLYGRLSEM FCIDSRELRS RVLYRGATGE VKHAGDEPFS  600
EFIKLARRLT ILTDAGSDNL GS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-652298117388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G32150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432300.0AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688668.10.0PREDICTED: auxin response factor 8, partial
SwissprotQ6K2230.0ARFH_ORYSJ; Auxin response factor 8
TrEMBLJ3LEZ80.0J3LEZ8_ORYBR; Auxin response factor
STRINGOB02G32150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-178auxin response factor 16