PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G31950.1
Common NameLOC102713801
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 283aa    MW: 30759.2 Da    PI: 7.251
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G31950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.4e-51101411128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrF P+deelv++yL++kv+++++   +++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev     
  OB02G31950.1  10 LPPGFRFFPSDEELVCHYLHRKVANERTAQGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRGPaa 106
                   79*************************888788***************87778889************************************99877 PP

           NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++vg++ktLvfy+grap+g+kt Wvmhe+rl
  OB02G31950.1 107 aaARAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 141
                   777778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-587160IPR003441NAC domain
PROSITE profilePS5100558.34210160IPR003441NAC domain
PfamPF023656.4E-2811141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MALREIESTL PPGFRFFPSD EELVCHYLHR KVANERTAQG STLVEVDLHA REPWELPEVA  60
KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE VRGPAAAAAR AVVGMRKTLV  120
FYQGRAPNGV KTGWVMHEFR LDSPHSTPRE DWVLCRVFQK RKGDGDGGPQ DSAGAGAASP  180
TFTSSMSSSS SHLQQPDHHP AAAAAAGGYC YGAVDSQLAA AGYSAAGFAA PAAPPPQMNT  240
SQPAAPQYQY GGAVLGFPEE YGLGTYLDMG FDVDDIRFPQ GWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48516110169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G31950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381221e-159BT038122.1 Zea mays full-length cDNA clone ZM_BFb0212P24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648848.10.0PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-60NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLJ3LEX80.0J3LEX8_ORYBR; Uncharacterized protein
STRINGOB02G31950.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-74NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]