PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G31260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 457aa MW: 48343.1 Da PI: 8.8526 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34 | 7.1e-11 | 61 | 117 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g OB02G31260.1 61 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 117 57*******************5444.2455535555.7799999*************98 PP | |||||||
2 | AP2 | 50.5 | 5.1e-16 | 160 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OB02G31260.1 160 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 211 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.83E-14 | 61 | 127 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.36E-16 | 61 | 127 | No hit | No description |
Pfam | PF00847 | 2.1E-8 | 61 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-11 | 62 | 126 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.108 | 62 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-22 | 62 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-22 | 160 | 221 | No hit | No description |
Pfam | PF00847 | 1.8E-10 | 160 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-18 | 160 | 221 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 161 | 220 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 161 | 225 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 161 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-6 | 201 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MSTGSHLPIV VAGGTGSASG GAAESTSSEN KRASGAMDSP GGGAIEAVPR KSIDTFGQRT 60 SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EDKAARAYDL AALKYWGTTT 120 TTNFPISNYE KELDEMKHMT RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR 180 VAGNKDLYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPVGGAA 240 RRLKEAADHA EAGATIWRAD MDGGVISGLA DVGMGAYASY HHGWPTIAFQ QPSPLAVHYP 300 YGQAPSRGWC KPEQDAAVAT AAHSLQDLQQ LHLGSAAAAH NFFQASSSST GGGGAASGYH 360 QGALGGNAFL MPAGTVVADQ GHSSTATNQG STCSYGNEEQ GKLIGYDAMA MASAGGGDPY 420 AAARSGYQLS QGSASTVSIA RANGYSANWS SPFNGMG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G31260.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955732 | 0.0 | EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824559.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 isoform X2 | ||||
Swissprot | Q5YGP7 | 1e-128 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | J3LEQ9 | 0.0 | J3LEQ9_ORYBR; Uncharacterized protein | ||||
STRING | OB02G31260.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-124 | AP2 family protein |