PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G28900.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 376aa    MW: 40207.3 Da    PI: 6.998
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G28900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.3e-07165186223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C +Cgk F+r  nL+ H+r H
  OB02G28900.1 165 FCDICGKGFRRDANLRMHMRAH 186
                   6*******************99 PP
2zf-C2H212.50.00046250274123
                   EEETTTT..EEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                   y C+ Cg  k+F    +L++H+r +
  OB02G28900.1 250 YACERCGgkKRFAVLADLRSHLRHC 274
                   89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6161186No hitNo description
SMARTSM003550.0019164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-6166186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573212245IPR015880Zinc finger, C2H2-like
SMARTSM0035517250273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKSTTNLLAG AGDAVAPAAA PAARGGDPSG SLVDGACDGD PRAALLRLVA LGDRMAAGPA  60
VRRRIAASMS GESEPLSSAD IHSVSSEISS AAHLVVLNAA SLLSSAIPFR APSPSPPPPP  120
PAPVQELPPV VPVPQELSQE AAKGDGDYDV VELDASELLA EHVHFCDICG KGFRRDANLR  180
MHMRAHGDRF KTLDALSRPG QPKQPAGREV RFSCPYAGCN RNRAHRRFRP LKSAVCARNH  240
FRRSHCPKLY ACERCGGKKR FAVLADLRSH LRHCGEEAQW RCSCGTTFSR KDKLFGHLAL  300
FEGHKPAIAE PNKGVVTAPA EASSISMMEE GGVDANCDRE EDDEGGFDPE FFQEWMEELR  360
GGAVTPNWSG PSEVGH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G28900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648771.10.0PREDICTED: protein indeterminate-domain 13-like
SwissprotQ9C8N52e-68STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLJ3LE230.0J3LE23_ORYBR; Uncharacterized protein
STRINGOB02G28900.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-70C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]