PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G27740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 202aa    MW: 22897.1 Da    PI: 6.8426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G27740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111035123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                  ++C+   C ++F++ s L+ Hi+  H
  OB02G27740.1 10 HVCKypECARRFTQESKLRAHIKQqH 35
                  789999****************9877 PP
2zf-C2H213.10.0002978103123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   y+Cp   C k + + + L+ H+++ H
  OB02G27740.1  78 YVCPydGCAKAYIHEYKLNLHLKKeH 103
                   9**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-5136No hitNo description
Gene3DG3DSA:3.30.160.602.8E-7133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1181035IPR007087Zinc finger, C2H2
SMARTSM003550.0491035IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801235IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-870100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.17E-574101No hitNo description
PROSITE profilePS501578.8578108IPR007087Zinc finger, C2H2
SMARTSM003550.01278103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKTHSADNYH VCKYPECARR FTQESKLRAH IKQQHEKGGL QNPGGSATNR SAPVDHSHHN  60
NTLKPPVAPP APSADRPYVC PYDGCAKAYI HEYKLNLHLK KEHPNHYQDA GAQTASSKSH  120
MSKRRKKPVL TTKMPLPKIP KRRGYTAPYQ PVSVVEEHQW PNNNVLYEDD SEETEEEGEN  180
AEDGARYRAA SSDDDEETED EE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142PKIPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G27740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1037601e-175AK103760.1 Oryza sativa Japonica Group cDNA clone:J033143G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648726.11e-148PREDICTED: uncharacterized zinc finger protein At4g06634
TrEMBLJ3LDQ71e-149J3LDQ7_ORYBR; Uncharacterized protein
STRINGOB02G27740.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-31C2H2 family protein