PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G27720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 719aa    MW: 75601.5 Da    PI: 10.1629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G27720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29e-09211255244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W++eEd  l+ +v+++G g W  I ++     +Rt  q++ rw
     OB02G27720.1 211 KPWSKEEDAELAAGVHKYGEGKWLDILNEYKfdSTRTHFQLQQRW 255
                      68******************************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-12204262IPR009057Homeodomain-like
PROSITE profilePS5129411.783205264IPR017930Myb domain
SuperFamilySSF466894.38E-12208261IPR009057Homeodomain-like
SMARTSM007171.6E-7209261IPR001005SANT/Myb domain
PfamPF002497.2E-8211255IPR001005SANT/Myb domain
CDDcd116602.33E-14213255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MKKEFPGQAP ASAAGGAGKR TRSFSEDDTY LLIHRYQPAT ILTMLQEVGK HVQAGKAIDW  60
RALVRKTSTG ITSPREYQML WRHFAYGHGL VDTLVPGAQP LDDESDLECE IEFVPAPGNE  120
ALAEATAFAK AIISGSLREQ ASGQRVNSEA AALNTPNEKI VRVPSDKQLV TSHRLTNDTG  180
PVSSSKQPSN AGSSPDLLDP NGHAKKKKKP KPWSKEEDAE LAAGVHKYGE GKWLDILNEY  240
KFDSTRTHFQ LQQRWALTCR RQGSTKPANP KIAITTSSEE LKAAQKAFTM AVIMPMGRSN  300
TPKPGGLQPN TPMVTTAAPE VKPVTAPLPS SVPVPVPVPV PVVPVPVPVQ PVQLPPSQLQ  360
QAPVQSAPPP PKVSNASNKS RNNSKKQIAQ SSPMNGPLSL QEVALAAGGR IATPSVATNF  420
LKAAQSTKAV HIRSRGTGSS KYSTGSKTPT AAGEPGTQLG SDQHLELQST GGPSPVLTAH  480
ATEQVRSVSE VAGVNPLGQS AGVHLLEAKK TLNTTPVSVS SDKMEIDDNS NYFVVTMEDL  540
FPEDVKQEDV EDPKIEEAID PKDADMIEFD RFVAQGCLNK DKVDKGKTVK IAPEAQGVAG  600
SQKKQLKVLP AAGKSNPIFA GAPAAAKKTR TPSPQGGVSS GGVGAGNVGV LNRSGGKAPA  660
PATPGSQNTV QKQQSTSSKG NLLMAKNVAP GTVTPASNRA NTAVNGASKV NLPASRKPA
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G27720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4289000.0AJ428900.1 Oryza sativa partial mRNA for putative Myb-family transcription factor (myb-L1 gene).
GenBankAP0040380.0AP004038.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_H01.
GenBankAP0047750.0AP004775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0451A10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648724.20.0PREDICTED: MICAL-like protein 1
TrEMBLJ3LDQ50.0J3LDQ5_ORYBR; Uncharacterized protein
STRINGOB02G27720.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-33MYB_related family protein