PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G27720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 719aa MW: 75601.5 Da PI: 10.1629 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.2 | 9e-09 | 211 | 255 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 ++W++eEd l+ +v+++G g W I ++ +Rt q++ rw OB02G27720.1 211 KPWSKEEDAELAAGVHKYGEGKWLDILNEYKfdSTRTHFQLQQRW 255 68******************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-12 | 204 | 262 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.783 | 205 | 264 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-12 | 208 | 261 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-7 | 209 | 261 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-8 | 211 | 255 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.33E-14 | 213 | 255 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MKKEFPGQAP ASAAGGAGKR TRSFSEDDTY LLIHRYQPAT ILTMLQEVGK HVQAGKAIDW 60 RALVRKTSTG ITSPREYQML WRHFAYGHGL VDTLVPGAQP LDDESDLECE IEFVPAPGNE 120 ALAEATAFAK AIISGSLREQ ASGQRVNSEA AALNTPNEKI VRVPSDKQLV TSHRLTNDTG 180 PVSSSKQPSN AGSSPDLLDP NGHAKKKKKP KPWSKEEDAE LAAGVHKYGE GKWLDILNEY 240 KFDSTRTHFQ LQQRWALTCR RQGSTKPANP KIAITTSSEE LKAAQKAFTM AVIMPMGRSN 300 TPKPGGLQPN TPMVTTAAPE VKPVTAPLPS SVPVPVPVPV PVVPVPVPVQ PVQLPPSQLQ 360 QAPVQSAPPP PKVSNASNKS RNNSKKQIAQ SSPMNGPLSL QEVALAAGGR IATPSVATNF 420 LKAAQSTKAV HIRSRGTGSS KYSTGSKTPT AAGEPGTQLG SDQHLELQST GGPSPVLTAH 480 ATEQVRSVSE VAGVNPLGQS AGVHLLEAKK TLNTTPVSVS SDKMEIDDNS NYFVVTMEDL 540 FPEDVKQEDV EDPKIEEAID PKDADMIEFD RFVAQGCLNK DKVDKGKTVK IAPEAQGVAG 600 SQKKQLKVLP AAGKSNPIFA GAPAAAKKTR TPSPQGGVSS GGVGAGNVGV LNRSGGKAPA 660 PATPGSQNTV QKQQSTSSKG NLLMAKNVAP GTVTPASNRA NTAVNGASKV NLPASRKPA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G27720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ428900 | 0.0 | AJ428900.1 Oryza sativa partial mRNA for putative Myb-family transcription factor (myb-L1 gene). | |||
GenBank | AP004038 | 0.0 | AP004038.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_H01. | |||
GenBank | AP004775 | 0.0 | AP004775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0451A10. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648724.2 | 0.0 | PREDICTED: MICAL-like protein 1 | ||||
TrEMBL | J3LDQ5 | 0.0 | J3LDQ5_ORYBR; Uncharacterized protein | ||||
STRING | OB02G27720.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 2e-33 | MYB_related family protein |