PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G27690.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 727aa MW: 82504.9 Da PI: 6.6088

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G27690.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	9.7e-23	105	191	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFs+rk k+++ + +++i ++++ Cskeg +e ek + +++ + ++trt+Cka+++ + +++g+w+v++l+++HnH+la OB02G27690.1 105 LYCDYGHRMGFSIRKGKQSYFTGTKRIRTKDYFCSKEGMKEGEKLT--DANFNDPHTRTNCKAMVRFRVNDQGEWKVIRLVSDHNHNLA 191 7**************************************99988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-20	105	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-29	315	409	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.421	596	634	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.7E-4	606	631	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0038	609	636	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MVNNDGEGGS GGGGGDPMCV DDSANAVVEM GVGVDQGVVS QHDDVGNDRV MEGQGVVSNS 60 GDEMGRRGYG DEAETEEAAT VQGSKEGTEE LLRKVVYSEE EAYKLYCDYG HRMGFSIRKG 120 KQSYFTGTKR IRTKDYFCSK EGMKEGEKLT DANFNDPHTR TNCKAMVRFR VNDQGEWKVI 180 RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVEAMLYGG YQAPGAPSRI TLGSTDVTNN 240 TDTSKQDSLP CYSSMARSPA IGNGDLQSLV RHLKSRANED GMFYWDVQID RGGRMTNFFW 300 RDGRSRIDFD CFGDVVVFDS TYRLNKHNLI CAPFVGVNHH WQSTMYGCAL LADESMSSFV 360 WLFKSFLEAM GNRHPRSIFT NQDQVMSKAI EEVFPNTCHR ISRWHIQKNA ASRLGALNGS 420 KAFNKLFTKC MQGCESEAEF EEAWAEMLSE FKLGDNKWLK KLYKLKQKWS GALNKHTFDG 480 GVEYEPQCDS LSNIFHCIAD KLTSMSAIVV AVDKLTEDWR EKEFDEDMRC SQKPPACIIK 540 HSDILNHAAK VYTHRIYKLF ETYFLDGCGA TKFKQLHCED DNRYQFEMTM QGRGSRVCIV 600 HFDMSTMQLN CSCSKFETMG LLCPHALKAL SIKNVCSIPE TYILKRWTKG AKKWVFNPKQ 660 YESSYQECMD DEAAYCNHVM RYAYDLVTKS QGHEELRKSL WETLESGEKE LEKYLENVTQ 720 YALSYAT

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MVNNDGEGGS GGGGGDPMCV DDSANAVVEM GVGVDQGVVS QHDDVGNDRV MEGQGVVSNS  60
GDEMGRRGYG DEAETEEAAT VQGSKEGTEE LLRKVVYSEE EAYKLYCDYG HRMGFSIRKG  120
KQSYFTGTKR IRTKDYFCSK EGMKEGEKLT DANFNDPHTR TNCKAMVRFR VNDQGEWKVI  180
RLVSDHNHNL ARPEERHLLR SARSLIAGRS SSVEAMLYGG YQAPGAPSRI TLGSTDVTNN  240
TDTSKQDSLP CYSSMARSPA IGNGDLQSLV RHLKSRANED GMFYWDVQID RGGRMTNFFW  300
RDGRSRIDFD CFGDVVVFDS TYRLNKHNLI CAPFVGVNHH WQSTMYGCAL LADESMSSFV  360
WLFKSFLEAM GNRHPRSIFT NQDQVMSKAI EEVFPNTCHR ISRWHIQKNA ASRLGALNGS  420
KAFNKLFTKC MQGCESEAEF EEAWAEMLSE FKLGDNKWLK KLYKLKQKWS GALNKHTFDG  480
GVEYEPQCDS LSNIFHCIAD KLTSMSAIVV AVDKLTEDWR EKEFDEDMRC SQKPPACIIK  540
HSDILNHAAK VYTHRIYKLF ETYFLDGCGA TKFKQLHCED DNRYQFEMTM QGRGSRVCIV  600
HFDMSTMQLN CSCSKFETMG LLCPHALKAL SIKNVCSIPE TYILKRWTKG AKKWVFNPKQ  660
YESSYQECMD DEAAYCNHVM RYAYDLVTKS QGHEELRKSL WETLESGEKE LEKYLENVTQ  720
YALSYAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G27690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102807	0.0	AK102807.1 Oryza sativa Japonica Group cDNA clone:J033108J05, full insert sequence.
GenBank	AP004038	0.0	AP004038.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_H01.
GenBank	AP004775	0.0	AP004775.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0451A10.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647361.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_015689296.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	J3LDQ2	0.0	J3LDQ2_ORYBR; Uncharacterized protein
STRING	OB02G27690.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-73	FAR1-related sequence 5