PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G27370.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 795aa MW: 90600 Da PI: 7.2341

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G27370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.9	2.9e-27	64	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ +A ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+ OB02G27370.1 64 EFYRYHAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHTLF 153 6*****************************************999.******************9999************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-24	64	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.8E-17	270	362	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.188	549	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-7	560	587	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	6.0E-5	561	582	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MSSPSPEPTS HPPPAPPPPP PAPSGCTTVD DREAGPSIPN LQAGTGDYTP WLGQEFASEH 60 DAYEFYRYHA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT 120 RTGCHANLVI RRKNDTSKYE VYAFEAQHNH TLFVPSCANP LQRKLSDVQS SEADNSASVT 180 HASEPENRNS ILAEKAINSI EGSQRSLQTR RQWETERGEA SALLNYLQDQ SRTDPLFYHA 240 VQLDAEDKVT NVFWADAKMV IDFGQFGDVV SFDIVSRNNM SLRPFASFVG FNNYGETVLL 300 GMALMYDDSL ESFQWLFETF LHAMSGRAPQ TVFSRQGSTV AKAISLVMPD TCHAICTWNL 360 KQSAKGNLNH LTRGDCGFIR EFKACINDYE EEVELFAAWE AMISKYNLHN NVWLKNVFEE 420 KEKWARPYTK WIFSAGMKNT QLNERLHSDV RDYLKSDVDI ISFLKHLKKV ANDRRYRELE 480 VEFSSRLKLP DFKIRAPILR QASEAYTGMI FQLFQEEYEE FQSAYIVSRD ESGPDREYIV 540 AILEKERQYK VHGNPCEQTV TCSCRKFETL GFLCSHALKV LDTMDIKYMP DRYLLKRWTK 600 YGRCLTAPHV ESRKVQADTT LEFSSRYEYL CPVYVRLVAR ASECEESYRV LDQCSVELGK 660 KIEEILQKQT SIDASAPQSD VEDITISSSA NGTDNELERA LDYSSSTRLK RRKKKGHNTK 720 SQRKGCIEKG LQKDKKVQLE QSPMQYTMLD AAQPGNVLFQ GLDISNPFPM GQLNYGGVQQ 780 QPGSCPSFPT VSRGL

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MSSPSPEPTS HPPPAPPPPP PAPSGCTTVD DREAGPSIPN LQAGTGDYTP WLGQEFASEH  60
DAYEFYRYHA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT  120
RTGCHANLVI RRKNDTSKYE VYAFEAQHNH TLFVPSCANP LQRKLSDVQS SEADNSASVT  180
HASEPENRNS ILAEKAINSI EGSQRSLQTR RQWETERGEA SALLNYLQDQ SRTDPLFYHA  240
VQLDAEDKVT NVFWADAKMV IDFGQFGDVV SFDIVSRNNM SLRPFASFVG FNNYGETVLL  300
GMALMYDDSL ESFQWLFETF LHAMSGRAPQ TVFSRQGSTV AKAISLVMPD TCHAICTWNL  360
KQSAKGNLNH LTRGDCGFIR EFKACINDYE EEVELFAAWE AMISKYNLHN NVWLKNVFEE  420
KEKWARPYTK WIFSAGMKNT QLNERLHSDV RDYLKSDVDI ISFLKHLKKV ANDRRYRELE  480
VEFSSRLKLP DFKIRAPILR QASEAYTGMI FQLFQEEYEE FQSAYIVSRD ESGPDREYIV  540
AILEKERQYK VHGNPCEQTV TCSCRKFETL GFLCSHALKV LDTMDIKYMP DRYLLKRWTK  600
YGRCLTAPHV ESRKVQADTT LEFSSRYEYL CPVYVRLVAR ASECEESYRV LDQCSVELGK  660
KIEEILQKQT SIDASAPQSD VEDITISSSA NGTDNELERA LDYSSSTRLK RRKKKGHNTK  720
SQRKGCIEKG LQKDKKVQLE QSPMQYTMLD AAQPGNVLFQ GLDISNPFPM GQLNYGGVQQ  780
QPGSCPSFPT VSRGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G27370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066798	0.0	AK066798.1 Oryza sativa Japonica Group cDNA clone:J013075G03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015688624.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	J3LDM0	0.0	J3LDM0_ORYBR; Uncharacterized protein
STRING	OB02G27370.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-82	FAR1-related sequence 5