PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G26130.1
Common NameLOC102704772
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 490aa    MW: 54056.4 Da    PI: 7.598
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G26130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056688123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y C+ C+k F r  nL+ H r H
  OB02G26130.1 66 YICEVCHKGFQRDQNLQLHRRGH 88
                  89*******************88 PP
2zf-C2H210.90.0014142164123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC  C+k +  +s+ k H + +
  OB02G26130.1 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                   58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-66588No hitNo description
Gene3DG3DSA:3.30.160.602.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035552107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.35E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSHTSEEESL KNLEQQPKLE DCAAGSSKGD TAMPVVKKRR GHPGNPDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EITCPHHDAT  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDNSRV NNHSLATMVG SLHGQQQDMF SHGVPSFSSS PDMIANLSSN  240
DHNTDSHLRS LSPYALITRN TALFSNQISP KESGFPLDGS VSSYPYMPMN SPYMSATALL  300
QKAAEMGAKT SQDPISPLLL KSFPNTLTSP RDHMNISSGS QGDSMGNSTV NSVCMKTTED  360
ENSYMSGRGN TLINSPWSSG IMRAGTVPLI GLMSNPFSMR AEKESPSIFP DNQTQHNRQE  420
NISVVGDAGL TQDFLGLGGS GNLDISSETY NANVTALSYS DEPEKSQEHI YSYHQSSLDP  480
TALEKPIWDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-33138204369Zinc finger protein JACKDAW
5b3h_F4e-33138204369Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G26130.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058450.0AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647254.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLJ3LD960.0J3LD96_ORYBR; Uncharacterized protein
STRINGOB02G26130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2