PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G25780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 154aa MW: 16888.4 Da PI: 11.4466 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.2 | 1.8e-13 | 53 | 96 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++ E+ +++++ ++ G+g Wkt ar++ k++++ q+ s++qk+ OB02G25780.1 53 WSAHEHSQFLRGLEKCGKGKWKTMAREFVKTKSPIQIASHYQKF 96 ******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.278 | 45 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.5E-13 | 46 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-10 | 48 | 98 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.6E-7 | 49 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-9 | 52 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-8 | 53 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.61E-7 | 53 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAPAGGGQAA APIEAARRAA APALTSGMVR SKPRKPRSRR MSGGAPRKKA EMWSAHEHSQ 60 FLRGLEKCGK GKWKTMAREF VKTKSPIQIA SHYQKFCIRE ESRRLNQCKR TSIHDITEPT 120 TPAPETTPAA ATAAVVNFGT GNDLAFQRRY QAIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 48 | RSRRMSGGAPRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G25780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688608.1 | 5e-93 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | J3LD61 | 1e-109 | J3LD61_ORYBR; Uncharacterized protein | ||||
STRING | OB02G25780.1 | 1e-110 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 8e-19 | MYB family protein |