PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G25460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 458aa MW: 51967.4 Da PI: 6.1858 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00056 | 89 | 112 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C dCgk+++++ + H ++ H OB02G25460.1 89 VCADCGKPCRSQTEVDLHTKRtgH 112 7***************99998666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF46934 | 1.15E-17 | 146 | 210 | IPR009060 | UBA-like |
Gene3D | G3DSA:1.10.8.10 | 1.5E-8 | 146 | 191 | No hit | No description |
PROSITE profile | PS50030 | 10.956 | 156 | 197 | IPR015940 | Ubiquitin-associated domain |
CDD | cd14290 | 2.45E-19 | 156 | 204 | No hit | No description |
Pfam | PF00627 | 1.4E-6 | 158 | 194 | IPR015940 | Ubiquitin-associated domain |
SMART | SM00165 | 8.9E-4 | 158 | 196 | IPR015940 | Ubiquitin-associated domain |
Gene3D | G3DSA:1.10.8.10 | 5.2E-4 | 192 | 213 | No hit | No description |
SuperFamily | SSF143503 | 1.29E-27 | 348 | 454 | IPR018997 | PUB domain |
CDD | cd10461 | 1.06E-63 | 352 | 458 | No hit | No description |
Pfam | PF09409 | 3.1E-23 | 365 | 436 | IPR018997 | PUB domain |
SMART | SM00580 | 5.1E-25 | 368 | 431 | IPR018997 | PUB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MARRLWQGWR SDGRRRATAV ERGRSRPSDE GRCRSASKQF YWEEEEDGEA TVAAVMARPT 60 ASVEEAQAHA EATSHANFSE STEAVLNLVC ADCGKPCRSQ TEVDLHTKRT GHTEFTDKTM 120 EAAKPIDLEA PQKHAAEAMD VDASSSAEPQ EMVAPEVNKE MLADLEAMGF TTARATRALH 180 FSGNSTIEGA INWLSEHQDD PDIDEPLMVP ANTNTEANKP SLSPEEMKIK AQELRERARK 240 KKEEEERRME REREKERIRI GKELLEAKRI EEDNERKRMI ELRRLEKEEE KRAREKIRQK 300 LEEDKAERRR KLGLPPEDPA AAKPSAPPPV EEKKSALPVR PATKAERMRD CLRNLKQQNK 360 DDDAKVKRAF QTLLTYIGNV AKNPDEEKFR KIRLTNATFQ ERVGNLHGGI EFLQVCGFEK 420 LEGNEFLFLA RDKVDKAVLN TAGAELNSAI TNPFFGVL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G25460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102956 | 0.0 | AK102956.1 Oryza sativa Japonica Group cDNA clone:J033115G09, full insert sequence. | |||
GenBank | CU406215 | 0.0 | CU406215.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109B09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648654.2 | 0.0 | PREDICTED: UBX domain-containing protein 1 | ||||
TrEMBL | J3LD29 | 0.0 | J3LD29_ORYBR; Uncharacterized protein | ||||
STRING | OB02G25460.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8464 | 15 | 17 |