PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G25250.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 444aa MW: 50017.5 Da PI: 5.3493

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G25250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	82.1	8.4e-26	9	76	25	101
SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+ weF++++F kg+k+ll++i+r+k OB02G25250.1 9 DASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFIKGQKHLLKNIHRRK 76 479*************************************999.........*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	9.1E-33	6	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.49E-23	8	75	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.3E-22	8	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	9.7E-26	8	75	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.0E-9	24	36	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	25	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.0E-9	37	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MGGRRDASDA SFVVWNHPEF AARLLPAYFK HSNFSSFIRQ LNTYGFRKID PERWEFANEY 60 FIKGQKHLLK NIHRRKPIHS HSHPPGALPD NERAIFEDEI EQLSREKTAL QSDIFKFKQQ 120 QSGAMMQIED LERRVLDMEQ RQIKMITFLQ QASKNPQFVN KLVKMAEASS IFTDAFHKKR 180 RLPGLDYSTD NTQTTSFYDD HSSTSKQETG NLLNQHFSDK LRLGLCPAMT ESNIITLSTQ 240 SSNEDNGSPP GKHPECNRME RECLPLVPQM MELSDTGTSI CPSKSSCFAL PINDEGLLTC 300 HLSLTLASCS MDVDNSQVHD ANGSAIDHGR DNPTEPATAT MEKDDAIDDR RFGDIQNTSV 360 DDGTAVATTP RGDARGANEA PAAPAAVVND KFWEQFLTER PGCSETEEAS SGLRTDPSRE 420 QMEENRQAYD HSRGNREDVE QLKL

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MGGRRDASDA SFVVWNHPEF AARLLPAYFK HSNFSSFIRQ LNTYGFRKID PERWEFANEY  60
FIKGQKHLLK NIHRRKPIHS HSHPPGALPD NERAIFEDEI EQLSREKTAL QSDIFKFKQQ  120
QSGAMMQIED LERRVLDMEQ RQIKMITFLQ QASKNPQFVN KLVKMAEASS IFTDAFHKKR  180
RLPGLDYSTD NTQTTSFYDD HSSTSKQETG NLLNQHFSDK LRLGLCPAMT ESNIITLSTQ  240
SSNEDNGSPP GKHPECNRME RECLPLVPQM MELSDTGTSI CPSKSSCFAL PINDEGLLTC  300
HLSLTLASCS MDVDNSQVHD ANGSAIDHGR DNPTEPATAT MEKDDAIDDR RFGDIQNTSV  360
DDGTAVATTP RGDARGANEA PAAPAAVVND KFWEQFLTER PGCSETEEAS SGLRTDPSRE  420
QMEENRQAYD HSRGNREDVE QLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-14	8	75	51	129	Heat shock factor protein 1
5d5v_B	9e-14	8	75	51	129	Heat shock factor protein 1
5d5v_D	9e-14	8	75	51	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G25250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647286.1	0.0	PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-5-like
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	J3LD08	0.0	J3LD08_ORYBR; Uncharacterized protein
STRING	OB02G25250.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-109	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]