PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G22590.1

Common Name

LOC102704677

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 466aa MW: 50044.4 Da PI: 10.436

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G22590.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	30.5	9.8e-10	202	292	6	98
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 w Dei +L l+ +++g++ +d+++ + ++++ k ++++++ +K+ rLK++++ kk ++ + ke+d +++ls+ iWg+ OB02G22590.1 202 RWARADEIKILEILVAHFKNHGTQL--STDGIIGAAGDNLDRKnIKHRNMYKKVGRLKQRYEATAKKFETSGN-LPYKEDDLRMYQLSSEIWGK 292 5************9999999764..578999999999987625667999************655555.44567889********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-16	202	291	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MARKRRAPTP PPPEAKPSDQ SSGEEEEEEG ESPAAMAPQK LGGAPHQVEE EEGGGSSESE 60 PMRKVAAKKA RSEASAYKKK RAASPEPAPS GKAKKAKAEK AAAPEPAPSG KAKKAKAEKT 120 AAPEPAPSGK GKKAKAEKAA APESTLSGMS KKAAKAEAGK AAAADTETAP SGKAKKSKSK 180 VEPGNAALDP SSSSKPRKAA TRWARADEIK ILEILVAHFK NHGTQLSTDG IIGAAGDNLD 240 RKNIKHRNMY KKVGRLKQRY EATAKKFETS GNLPYKEDDL RMYQLSSEIW GKDAKEAVSV 300 LASQNNGIPA KSKKGQGQAK KDKVDGDSKE DTTAVNEKGG TLAENKKGKA TKQKTGAEAK 360 IGSSKEATTN SKGGENHTEG EANETNKRRK FIELQSLYPN LAFFVKEMEV QHQSGSFFKR 420 SFELISDDKA CTLETKIKNH RKVQVETQLR RDNIRKEVFN AFLGLF

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MARKRRAPTP PPPEAKPSDQ SSGEEEEEEG ESPAAMAPQK LGGAPHQVEE EEGGGSSESE  60
PMRKVAAKKA RSEASAYKKK RAASPEPAPS GKAKKAKAEK AAAPEPAPSG KAKKAKAEKT  120
AAPEPAPSGK GKKAKAEKAA APESTLSGMS KKAAKAEAGK AAAADTETAP SGKAKKSKSK  180
VEPGNAALDP SSSSKPRKAA TRWARADEIK ILEILVAHFK NHGTQLSTDG IIGAAGDNLD  240
RKNIKHRNMY KKVGRLKQRY EATAKKFETS GNLPYKEDDL RMYQLSSEIW GKDAKEAVSV  300
LASQNNGIPA KSKKGQGQAK KDKVDGDSKE DTTAVNEKGG TLAENKKGKA TKQKTGAEAK  360
IGSSKEATTN SKGGENHTEG EANETNKRRK FIELQSLYPN LAFFVKEMEV QHQSGSFFKR  420
SFELISDDKA CTLETKIKNH RKVQVETQLR RDNIRKEVFN AFLGLF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G22590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006648578.1	0.0	PREDICTED: translation initiation factor IF-2-like
TrEMBL	J3LC92	0.0	J3LC92_ORYBR; Uncharacterized protein
STRING	OB02G22590.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37

Link Out ? help Back to Top
Entrez Gene	102704677