PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G21340.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 730aa    MW: 85070.3 Da    PI: 6.9887
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G21340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.21.7e-1586169290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   fY++ A+++GF v ++ skk  ++g++   t+ Cs++gk++ ++++   + +++++tr +C  k++  ++ d+k+++++l l+HnH+++
  OB02G21340.1  86 FYKSCARKIGFGVIRRGSKKI-EDGKVRYFTLACSRQGKAQYTSTN---KFKPNPSTRQQCPTKVNFYLH-DEKFCISTLTLDHNHAVS 169
                   9*************9999988.8899****************9888...99******************9.9**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1286170IPR004330FAR1 DNA binding domain
PfamPF105519.1E-36289382IPR018289MULE transposase domain
PROSITE profilePS509669.495571609IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-4583603IPR007527Zinc finger, SWIM-type
SMARTSM005750.0094584611IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MSYHIFDENV VHTIFSYNYR TTIDGVGRNG DTNLCFDDEQ DHVISDDIFA VEEVESDSSA  60
LVADKTKLLE SAKGMLFDSE DSATCFYKSC ARKIGFGVIR RGSKKIEDGK VRYFTLACSR  120
QGKAQYTSTN KFKPNPSTRQ QCPTKVNFYL HDEKFCISTL TLDHNHAVSP SARHLRCHKE  180
LDLQAKRRLE LNDQAGIRIN KDFSSLVMQA GGYENLQFGQ KDCRNYLQDV QKLKLGAGDA  240
HAVYQYFLCM QSKDPNFFFV MDMDEDSRLK HVLWVDARSS ATYESFSDVV TFDTTYLTNK  300
YHMPFAPVGV NHHGESVLLG CALLSNEETE TFVWLFRSWL SCMSNKAPNA IITDQCRAMQ  360
NAIMEVFPEA RHRWCLWHIM KKIPEKLRGY LEYEDINSTL SNVVYDSLNR DDFDRGWMKM  420
IDEFSLQDNE WVVGLYDNRD LWVPTYVKDT FWVGMSSSQR SESVNAFFDG YVNARTTLKQ  480
FLEQCDNALR DKVEKENKSD CKSFQEAIPC ITHYEFEGQF QVAYTNKKYK EFQDELRGKI  540
YWYATLRKTE GSVHTFSVRE DRKIGEQRIV SKLLVLFNQE DCDLHCECRR FEFRGILCRH  600
IISILPLVEI EKVSSKYVIQ RWRKDFKHKH TFIKCSYDDQ LDTPIVRRFD TLCKRFNEVA  660
ENGSVSDALY NIVMDGLNEL QIKIDAHHQQ EIQQYQQNEK NKDMVPKQGK VVLSPISVRR  720
RGCPPSMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00434DAPTransfer from AT4G15090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G21340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369980.0AC136998.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314597.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLJ3LBW70.0J3LBW7_ORYBR; Uncharacterized protein
STRINGOB02G21340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-124FAR1 family protein