PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G21080.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 388aa    MW: 42386.5 Da    PI: 3.9191
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G21080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.32.3e-1781322127
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                    +Gf+F+Ptde l++++L + +++ + +l+  +   d   + Pw L +++  +e+   yf ++++    +g++ + ++  g+W ++ +d +  ++  
  OB02G21080.1   8 SVGFKFEPTDEMLLQFFLLPYLRDGRPPLAGLVLLDDPRALPPWMLLQRHGRGEEdGAYFIAPAAG---EGRQVRSVAGGGRWVKQRTDAKGAVRla 101
                   68************************9998878888**********85554444427788887655...4555555999****98887665444443 PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                   +++  + + +L f+  ++++  +t Wvmhey 
  OB02G21080.1 102 GETFRWERFSLNFHCDDRRS-GSTGWVMHEYV 132
                   888899********666665.59********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-243145IPR003441NAC domain
PROSITE profilePS5100523.1797153IPR003441NAC domain
PfamPF023652.5E-139132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAPSLGLSVG FKFEPTDEML LQFFLLPYLR DGRPPLAGLV LLDDPRALPP WMLLQRHGRG  60
EEDGAYFIAP AAGEGRQVRS VAGGGRWVKQ RTDAKGAVRL AGETFRWERF SLNFHCDDRR  120
SGSTGWVMHE YVVFPPPGSA IATSHRACYI SFTGHGQNRK RIPDGYGLEA SQSTSSSLAA  180
DVEASQSQST SSSLAAAPEQ QSNQEYAYGE QNQCSIVPQQ QSNQEYAYGE QNQCCIVPQQ  240
QSNQDFAGVN DGGATVSPEE EDGQSLDDME MDGMISALMK TLDAPEDEPP GFLPEQQSNQ  300
DFAFYEQQQQ QFFLSDQLVD EVLAGVNDGG ATISPEEEDG QFLDDMEMDG MVSEWFETAA  360
GSEEGSLAGA ATLPSFVQDE PPCFLPEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G21080.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649258.15e-66uncharacterized protein LOC107275324
TrEMBLJ3LBU10.0J3LBU1_ORYBR; Uncharacterized protein
STRINGOB02G21080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-06NAC domain containing protein 94