PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G21030.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 1232aa    MW: 141709 Da    PI: 7.0637
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G21030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1561.3e-17341423191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fY+++A ++GF  ++ +++++      +k t+ C k g+++ + +  +++r+++  +rt+C+ak++vk++ +g+we +++++eHnH+l+p
  OB02G21030.1 341 RFYEAHALKTGFVAKRGTNYRR------KKFTLECHKTGTSKLTPNP-QRKRKKNIIERTQCQAKVVVKLH-SGQWEYASVRNEHNHPLCP 423
                   5*******************99......4678***********9999.9*********************9.9****************97 PP
2FAR1561.3e-17614699191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   kfY ++A  +GF  ++ +++k+       k ++ C+++gk++++k++    ++r+++a ++t+Cka++ vk++ +g+w  t +++eHnH+l+p
  OB02G21030.1 614 KFYYAHALLTGFVGKRGTNYKR------RKFHLECNRSGKSKSTKSSenLLTKRKSNAIEKTQCKARVIVKLD-KGEWLFTAVRHEHNHPLCP 699
                   6*******************99......5678********999988855668999******************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-15341423IPR004330FAR1 DNA binding domain
PfamPF031015.9E-16614699IPR004330FAR1 DNA binding domain
PfamPF105515.7E-24820912IPR018289MULE transposase domain
PROSITE profilePS509668.65411021138IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1232 aa     Download sequence    Send to blast
MQSLMSNGWQ NCLNAGLAWS TKFHSVAMEV SGFFVLDFIR SWDGKKLSSI FSDGIKLRTE  60
FFISKLKFNE NEAKENIPVD IQEFVDRISG GGGGGGGGEG GVHVPRRGLR SDAFSFWHVR  120
ARSESMSPNP KQLHVQGRDA ELLTRGDSPI DVVPPLGIVP DDSEQVLAHV NSISIPGNPG  180
NEVSPLQAWN LPDLHSEKVL QASKNDGQIL ITPLELIKKP VDKQVIAEGR LQLTGDGHQI  240
LSSNGMDKTA HELYLDQLGR QTNIMDQPEQ RTEEQSQSHD NMESDEVSCN DKSSDGESDR  300
SLGNESDKEL GTHYSPSFMD LDNARPPELG MKFPTLEDAQ RFYEAHALKT GFVAKRGTNY  360
RRKKFTLECH KTGTSKLTPN PQRKRKKNII ERTQCQAKVV VKLHSGQWEY ASVRNEHNHP  420
LCPSYSLRFS KRKRRQNPPS QKQLYVQRNG ELLTQADNLE EQVVQPLISA NFNEVNNKRT  480
PGHSENSIPT AEQEPVNEQS LKDRRLQSAD NYQEQSSNGI DKTAKQPIVD KLVEQNNSMD  540
QSLQHTEEQN RSHDNVESSE APSDDTSSEG DSGSSSGNES DKELRKYYPS FEELENSRPP  600
EPGMKFPSLQ AAQKFYYAHA LLTGFVGKRG TNYKRRKFHL ECNRSGKSKS TKSSENLLTK  660
RKSNAIEKTQ CKARVIVKLD KGEWLFTAVR HEHNHPLCPS PSLTKFLLDH KQMSTAEKSF  720
LRVMKQNRIP PKKILKVFRK IRVCFRDTPF ENKDENNIPQ TEHRIANSDV ESTLKHFTEL  780
QMQNPEFFYM LQKDENNTVT SIFWSDTRSR IEYDIFGDFI MLDAIYSTDM CNMPFVPIIG  840
INNHARPLVL GCALLKDEKT ETFKWMWRTF LQVMGGKMPR TVMANQDTSM EEAIARVMPH  900
VRIRFCKRHV MSKTQEKLGA FMAAKGNINA DLHNLVHNSL LEEEFEEEWA ELIERYNASE  960
NHHLQLMWQT RKSWAPVYFR EYFYPFVESV GCNEAMNSLF KDNMLPKDTI DKFIGRYMEI  1020
QENVKKVDDE DRFHSGADLK YVSMQPIEQH AAHIYTREIF LKVQKELLHS TAFNVQEIQT  1080
GTVYILEKVF NYENPEFDRN SFEVLVEPGI KAFKCQCAKF TRDGILCCHI FRLFTQFGIN  1140
EIPEQYRMPR WTKMFREEQL KKNKENKLDK HDIKDSENTL RYAMLMNKVA EIGRQICHDE  1200
IKFSSFMLEL GRIQERLIME RGENAENNDD TC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382386RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G21030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0640780.0AK064078.1 Oryza sativa Japonica Group cDNA clone:002-100-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689559.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLJ3LBT60.0J3LBT6_ORYBR; Uncharacterized protein
STRINGOB02G21030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-69FAR1-related sequence 5