PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G20640.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 420aa    MW: 46481.1 Da    PI: 7.1361
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G20640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR216.9e-071261642
           TCR 16 kYCeCfaagkkCseeCkCedCkNkeek 42
                  +YCeCfaa ++C+  C+C+ C Nk e+
  OB02G20640.1  1 MYCECFAASVYCDG-CHCSPCGNKVEN 26
                  6*************.********9875 PP
2TCR48.91.3e-1571110140
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   k++kgC+C+ks+ClkkYCeCf+a+  Cs++C C+dCkN e
  OB02G20640.1  71 KHNKGCHCRKSECLKKYCECFQANILCSKNCGCKDCKNFE 110
                   589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036382.8E-4123IPR005172CRC domain
SMARTSM011140.09126IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163431.4471111IPR005172CRC domain
SMARTSM011143.0E-1771112IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.2E-1274109IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MYCECFAASV YCDGCHCSPC GNKVENENTR KEAIQSILLR NPLAFQPKIE NSPNTVNVRK  60
DNSGAVPVVP KHNKGCHCRK SECLKKYCEC FQANILCSKN CGCKDCKNFE GSEERQTLVQ  120
MENASDRNHI QEAANFVLNG AIGSLGYKSS SKRRKKSQEN SLGEQIMSES QFQSADHADV  180
SQLTPSCTGS GWDIAINHQS KSSKMIYRSP LANTIPLIEV SDLVKHVVVA CRKEAEAFPA  240
KADNKVDMQE ENDKMNNDKN KEQKLKEASL KDIQNKSCID QLNINETGPH LVNTSKDFRP  300
TSPGTQALMC DEQDTTFGND DYRSPSMVPS CGQGISELNV AQENKVLTGL RDYLRVLITR  360
GNINATKSSA EAAMELDSWR HHRATVFCQD KSMSSNGPET LGNNQASMSN DEQKGKSEVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-21112124133Protein lin-54 homolog
5fd3_B8e-21112124133Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G20640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-114CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689066.10.0PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLJ3LBP70.0J3LBP7_ORYBR; Uncharacterized protein
STRINGOB02G20640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-71Tesmin/TSO1-like CXC domain-containing protein