PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G20420.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 456aa    MW: 51309 Da    PI: 9.3496
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G20420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-092291644
                     HHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrw 44
                     v+++G ++W+t+art++ gR   qck rw
     OB02G20420.1  2 VNRYGQKNWETVARTIP-GRNVQQCKARW 29
                     99***************.*********** PP
2Myb_DNA-binding43.86e-143981145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +++W++eE+++l++a + +G++ W +  ++++ gRt + +k++w+
     OB02G20420.1 39 KQAWSQEEELKLIRAQQTYGNK-WQRMVEHFP-GRTSYAIKEHWR 81
                     799*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001676.17E-6129No hitNo description
PROSITE profilePS512949.635133IPR017930Myb domain
SMARTSM0071714135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13242IPR009057Homeodomain-like
PfamPF002491.7E-5229IPR001005SANT/Myb domain
SuperFamilySSF466891.39E-201389IPR009057Homeodomain-like
PROSITE profilePS5129421.0393488IPR017930Myb domain
SMARTSM007179.1E-123886IPR001005SANT/Myb domain
PfamPF002499.3E-123981IPR001005SANT/Myb domain
CDDcd001674.95E-104181No hitNo description
Gene3DG3DSA:1.10.10.605.2E-174389IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVNRYGQKNW ETVARTIPGR NVQQCKARWS FTLDPAINKQ AWSQEEELKL IRAQQTYGNK  60
WQRMVEHFPG RTSYAIKEHW RGPLKRKLNS YLASGLLKKF SGLPENLLVT QNSDSEILQQ  120
CDGSFGENQL ISDLQASLKP KQGLLKKSPG LPKNLSVSQN SDTDIPQECD ASSDENQLLS  180
DFRASLKSRQ GLLEKFPGGN QSVSPDSHSN ILQRCDGSSD ENQLLSDLRT SLKSKEGLLK  240
KFPGLPENLS VPQNNDLDVV QQFDGLSDEN QLLSDLRARL KSKRATSSKS KTSSKSKQRT  300
SSKSKRGFIE LCENTGTSEG ESSQFLCKKR HDPHPVEVSQ RIRDRLNERK KARKRLAFLS  360
SPVELKVCAI SKSERPLQKS KQMSPEVIIS PEVPSECEKI VKSKPPLADF NQAKNICSLE  420
ISDLLDMSYC DGLMIIPPTG YSNDDDFMQS ESRMDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-1919021110B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347355ERKKARKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G20420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647149.20.0PREDICTED: transcription factor MYB28-like isoform X2
RefseqXP_015689000.10.0PREDICTED: transcription factor MYB28-like isoform X1
TrEMBLJ3LBM50.0J3LBM5_ORYBR; Uncharacterized protein
STRINGOB02G20420.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-34myb domain protein 3r-4