PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G20370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 156aa MW: 17379.4 Da PI: 4.8316 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 22.7 | 3.3e-07 | 76 | 120 | 47 | 88 |
FAR1 47 k....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 k +++e +++++tr +C ak++ ++ +k+++++l l+HnH+ OB02G20370.1 76 KalytSTNEFKPNPSTRQQCPAKVNFYLH-GEKFCISTLTLDHNHA 120 24444677889*****************9.9**************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MEFRSAFCAA LLLVIVHSLH LSANASTEVM DTNLCSDDEQ DHIISDEDEF AVEEVDSDSR 60 TLVADKTKLL EPAKGKALYT STNEFKPNPS TRQQCPAKVN FYLHGEKFCI STLTLDHNHA 120 GFQSNHPAQP SHISSYMDLL QGKGDLTELL SQHMKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G20370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136998 | 2e-51 | AC136998.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence. | |||
GenBank | AP014967 | 2e-51 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3LBM0 | 1e-112 | J3LBM0_ORYBR; Uncharacterized protein | ||||
STRING | OB02G20370.1 | 1e-113 | (Oryza brachyantha) |