PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G19660.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 407aa    MW: 45162.6 Da    PI: 6.8928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G19660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51591901128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ 
  OB02G19660.1  59 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcSIGTgPQDEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIFL 154
                   69****************************.9***************942444442445*************************************9 PP

           NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  OB02G19660.1 155 GagAGRRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 190
                   8777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-5854210IPR003441NAC domain
PROSITE profilePS5100558.21659210IPR003441NAC domain
PfamPF023652.4E-2760190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTNANTLSLT DHATNHYSQL ISITSMHAHS TSTLYNPRSC PLEEEKNKRM HPNGAPLTVP  60
PGFRFHPTDE ELLYYYLRKK VAYEAIDLDV IREIDLNKLE PWDLKDRCSI GTGPQDEWYF  120
FSHKDKKYPT GTRTNRATAA GFWKATGRDK AIFLGAGAGR RIGLRKTLVF YTGRAPHGKK  180
TDWIMHEYRL DDDNVDVPEE GWVVCRVFKK KSIHHQRGGF DDQPDVAAAA EDDDDLRYQV  240
HGAAAFAMSS PEVDQKHALQ QQLAHGHGGG FVPPAFDPSM HLPQLASADA TLCGVGVGGH  300
VAFASMNPLE AVGSAGEMLI LSGADGGRFG AGADWSILDK LLASHQNLDQ LFHGKAAGSH  360
HHHHHHQQQQ QQQQQQVAMD AASSMQQRLP FHHYLGLEAA DLLKFAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-505721215167NO APICAL MERISTEM PROTEIN
1ut4_B2e-505721215167NO APICAL MERISTEM PROTEIN
1ut7_A2e-505721215167NO APICAL MERISTEM PROTEIN
1ut7_B2e-505721215167NO APICAL MERISTEM PROTEIN
4dul_A2e-505721215167NAC domain-containing protein 19
4dul_B2e-505721215167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G19660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639430.0AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBankAK1012800.0AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647124.10.0PREDICTED: NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-107NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLJ3LBE90.0J3LBE9_ORYBR; Uncharacterized protein
STRINGOB02G19660.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-76NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]