PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G18670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 382aa MW: 44353.4 Da PI: 12.506 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 77.5 | 2.3e-24 | 12 | 70 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 F+ k+y++++d++++ ++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+Y OB02G18670.1 12 FVAKTYRMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTY 70 9*********************99**********************************9 PP | |||||||
2 | HSF_DNA-bind | 67.4 | 3e-21 | 96 | 154 | 34 | 101 |
HHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 34 eefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101 + f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ll++i r++ OB02G18670.1 96 HAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLRRIGRRS 154 68*******************************999.........********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.0E-27 | 4 | 71 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-23 | 8 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.8E-24 | 8 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.6E-20 | 12 | 70 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-14 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-14 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-14 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SMART | SM00415 | 8.8E-23 | 77 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.1E-18 | 95 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.76E-17 | 96 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.3E-21 | 96 | 153 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE pattern | PS00434 | 0 | 103 | 127 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MATAAEGGVA PFVAKTYRMV DDPATDAVVS WGPGNNSFVV WNTPEFARDL LPKYFKHSNF 60 SSFVRQLNTY VRRPSLSLSP SDSSPSPSLP ALSIYHAFSQ TLLPAHFKHS NFSSFVRQLN 120 TYGFRKVDPD RWEFAHVSFL RGQTHLLRRI GRRSGGGXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRRR VLRRRRLRPG 300 ARRVRAGRHG RLHGPLHRRR RVRRRLRGQR VPDAVRVPGG GQRLLTAAAA MRFVLRVTPD 360 RFVYLTPAFF PPFSQSVWEK WL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-19 | 2 | 153 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-19 | 2 | 153 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-19 | 2 | 153 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 292 | 302 | RRRRLRPGARR |
2 | 320 | 326 | RVRRRLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G18670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106488 | 3e-80 | AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3LB50 | 2e-78 | J3LB50_ORYBR; Uncharacterized protein | ||||
STRING | OB02G18670.1 | 3e-79 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17750.1 | 2e-36 | heat shock factor 1 |