PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G17140.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1110aa MW: 127828 Da PI: 8.3727

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G17140.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.6	1.8e-22	491	577	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGFs+rk++++++ +g+ ++ f Cs+eg++ ++ + r++ra+tr +Cka+++ +++g w v+k+el+HnH l+ OB02G17140.1 491 NFYNSYARNVGFSIRKNHTNTR-ADGSLCSKYFLCSNEGQPVVSTAQ--PGRKKRASTRSDCKARVQFYITREGIWTVQKVELDHNHYLV 577 6*************997775.9999**********999877..9***********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-19	491	577	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-29	692	785	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.2	973	1008	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	983	1006	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-5	983	1010	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1110 aa Download sequence Send to blast
MLVQSGEVGR RRRRGEAGAE GEGVRAAEPQ GVHPPAQAEE IAGARSPRRR RXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 240 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 360 XXXXXXXXXX XXXXXXXXXX XXXXGHHVGS SHAVEAAAMV ALDGKLCVVR NDMSASVVDV 420 AAGQAGAPRW ETVAGKGQIK AFVTNLLSTI AGARARAKNR VLHCQDYDQA GLPNCVPKVG 480 MTFNSENEAY NFYNSYARNV GFSIRKNHTN TRADGSLCSK YFLCSNEGQP VVSTAQPGRK 540 KRASTRSDCK ARVQFYITRE GIWTVQKVEL DHNHYLVSPD KSHMLRSQRR LMPSYQQVVN 600 QMRNEGITAA DMQRVFKQWS RGAENVHLLK KDNERKYLQP SYAQKLLEYL KNKQTENPSF 660 FYAVQLNDNG QIANFFWTDC QAIVDYACFG DVVSFDTTFE TNRFEMPFAP FVGTNHHKQP 720 IVFGASLVYD ESSESFHWLF QTFLTAMSGK QPATIFTDPS TEIAKAIRLV FPSSSHHLCL 780 RHICHDAVKH FNHVICNHPE FLSDFKRCIY EDRSVAFFDL KWKELVNTYN LDGNDWMNNL 840 YAMREKWAAV YCRDSFYADM VSAQNAEGTS NAFKNFRRKL GLPEFLEEYE KCITSLRRKE 900 LEADYDSRHT SPDPYVPDLP MLKTAAESYT RNLYSHFEEE FKKLFTLSCS LLSQDRTCST 960 YKLAPFNSGE EAYVIFNSED TTVSCSCRMY ECTGMLCKHA LRVLNYSNIF TMPSHYVYKR 1020 WTKYAKDGLF CCRNKSQSGS ESSMLRCARI SQKMHSVALR HSMSEKALQF LESGVDKLTW 1080 EVENLLTHIN LNGNDTSQSS GFCNGATVEV

Sequence ? help Back to Top

Protein Sequence Length: 1110 aa Download sequence Send to blast

MLVQSGEVGR RRRRGEAGAE GEGVRAAEPQ GVHPPAQAEE IAGARSPRRR RXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXGHHVGS SHAVEAAAMV ALDGKLCVVR NDMSASVVDV  420
AAGQAGAPRW ETVAGKGQIK AFVTNLLSTI AGARARAKNR VLHCQDYDQA GLPNCVPKVG  480
MTFNSENEAY NFYNSYARNV GFSIRKNHTN TRADGSLCSK YFLCSNEGQP VVSTAQPGRK  540
KRASTRSDCK ARVQFYITRE GIWTVQKVEL DHNHYLVSPD KSHMLRSQRR LMPSYQQVVN  600
QMRNEGITAA DMQRVFKQWS RGAENVHLLK KDNERKYLQP SYAQKLLEYL KNKQTENPSF  660
FYAVQLNDNG QIANFFWTDC QAIVDYACFG DVVSFDTTFE TNRFEMPFAP FVGTNHHKQP  720
IVFGASLVYD ESSESFHWLF QTFLTAMSGK QPATIFTDPS TEIAKAIRLV FPSSSHHLCL  780
RHICHDAVKH FNHVICNHPE FLSDFKRCIY EDRSVAFFDL KWKELVNTYN LDGNDWMNNL  840
YAMREKWAAV YCRDSFYADM VSAQNAEGTS NAFKNFRRKL GLPEFLEEYE KCITSLRRKE  900
LEADYDSRHT SPDPYVPDLP MLKTAAESYT RNLYSHFEEE FKKLFTLSCS LLSQDRTCST  960
YKLAPFNSGE EAYVIFNSED TTVSCSCRMY ECTGMLCKHA LRVLNYSNIF TMPSHYVYKR  1020
WTKYAKDGLF CCRNKSQSGS ESSMLRCARI SQKMHSVALR HSMSEKALQF LESGVDKLTW  1080
EVENLLTHIN LNGNDTSQSS GFCNGATVEV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G17140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102813	0.0	AK102813.1 Oryza sativa Japonica Group cDNA clone:J033108L18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647047.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	J3LAP7	0.0	J3LAP7_ORYBR; Uncharacterized protein
STRING	OB02G17140.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-122	FAR1-related sequence 5