PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G16610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 24306.6 Da PI: 7.4423 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 165 | 181 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C+k+F+r nL+ OB02G16610.1 165 FSCSVCHKTFNRYNNLQ 181 89***********9997 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 215 | 231 | 1 | 17 |
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++C+ C+k+F+r nL+ OB02G16610.1 215 FSCSVCHKTFNRYNNLQ 231 89************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48695 | 6.91E-5 | 123 | 223 | IPR011031 | Multihaem cytochrome |
Pfam | PF13912 | 0.0047 | 165 | 180 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0047 | 215 | 230 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MEDARTSNLR ISRGHGHGCQ PSSVKEPFPF LSLIASSSPS SSSSSRHQQQ EGRGGHDQLL 60 QYACLSGEHQ YREEEEEVTV ALSIGLPVIS SSSPSSSVAP ATKLANQDGG GTCAGGGGGE 120 EGTGGDGVSC SGGVGPAVGS VRTAGGGGQY WIPTAAQILA GATQFSCSVC HKTFNRYNNL 180 QIDSGPGGGS VRTAGGGGQY WIPTAAQILA GATQFSCSVC HKTFNRYNNL QQPRVTR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G16610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108729 | 1e-38 | AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624987.2 | 2e-20 | zinc finger protein WIP5 | ||||
TrEMBL | J3LAJ4 | 1e-170 | J3LAJ4_ORYBR; Uncharacterized protein | ||||
STRING | OB02G16610.1 | 1e-171 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP52293 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-13 | C2H2 family protein |