PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G16530.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 383aa    MW: 42458.6 Da    PI: 11.5218
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G16530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79.2e-12179222343
                   XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHH CS
        bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNk 43 
                   + k  rr+++NReAAr+sR+RKka+i++Le+   +  +Le+e++
  OB02G16530.1 179 DAKTLRRLAQNREAARKSRLRKKAYIQNLETsriRLSQLEQEMM 222
                   67999************************974447788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.8E-8177221No hitNo description
SMARTSM003389.6E-8177240IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.864179224IPR004827Basic-leucine zipper domain
PfamPF001704.8E-9180223IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-7181222No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGDRPWQQLQ QPHDQQQASC SVTAGTMMQA SAASSSIHGS SIIRKDPGGG YDMAELDHIF  60
LYLNSQDQAS SAIQDQQPQT LNIFPSQPMH AGEPSPRGSS SMATNSSAPS SSALAAGSAV  120
CLREGRQGRR RCRRQGMARS HVSLLGRLGR LIDQKEGAGA GKQHGGGAAA EHEGPKTPDA  180
KTLRRLAQNR EAARKSRLRK KAYIQNLETS RIRLSQLEQE MMQRSRTQGA ILGGGAFSSG  240
IGGQSPEAAW FDGEYARXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXEA PRGRRRRLPP RLRDVAARRR  360
ALLPLDRWLP PLRDHQGNLT AST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127134GRRRCRRQ
2344351RRRLPPRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G16530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626935.11e-111transcription factor TGAL9-like isoform X1
SwissprotQ0E3421e-114TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBLJ3LAI61e-132J3LAI6_ORYBR; Uncharacterized protein
STRINGOB02G16530.11e-132(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.25e-19bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]