PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB02G15590.1 | ||||||||
Common Name | LOC102716006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 206aa MW: 23400.2 Da PI: 6.5206 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.2 | 5.7e-08 | 144 | 177 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + OB02G15590.1 144 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 177 469*****************************87 PP | |||||||
2 | ELK | 27.6 | 6.7e-10 | 98 | 119 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+++L+++++E++ OB02G15590.1 98 ELKNELKQGYKEKLVDIREEIL 119 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03791 | 9.8E-12 | 1 | 41 | IPR005541 | KNOX2 |
SMART | SM01256 | 6.2E-14 | 1 | 42 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.057 | 98 | 118 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0023 | 98 | 119 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-6 | 98 | 119 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.353 | 118 | 181 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-16 | 120 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.3E-10 | 120 | 185 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.18E-11 | 121 | 182 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 125 | 182 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 138 | 177 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MTHYVLLLCS FKEQLQQHVR VHAMEAVMGC WELEQSLQSL TGASPGEGTG ATMSDDEDNQ 60 VDSEANMFDG NDGSDGMGFG PLMLTEGERS LVERVRHELK NELKQGYKEK LVDIREEILR 120 KRRAGKLPGD TASILKAWWQ AHSKWPYPTE DDKARLVQET GLQLKQINNW FINQRKRNWH 180 SNPASSGEKT KKKRNVTGDS GAEQSW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 3e-13 | 121 | 185 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 174 | 193 | RKRNWHSNPASSGEKTKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB02G15590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB061817 | 0.0 | AB061817.1 Oryza sativa Japonica Group HOS58 mRNA for KNOX family class 2 homeodomain protein, partial cds. | |||
GenBank | AK243352 | 0.0 | AK243352.1 Oryza sativa Japonica Group cDNA, clone: J100060L07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646986.1 | 1e-153 | PREDICTED: homeobox protein knotted-1-like 2 isoform X1 | ||||
Refseq | XP_015626237.1 | 1e-152 | homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | Q0E3C3 | 1e-153 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | J3LA92 | 1e-152 | J3LA92_ORYBR; Uncharacterized protein | ||||
STRING | OB02G15590.1 | 1e-153 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-122 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102716006 |