PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G14680.1
Common NameLOC102704484
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 258aa    MW: 28736.3 Da    PI: 4.5378
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G14680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.2e-56811851102
         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvd 94 
                   ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+dflvd
  OB02G14680.1  81 QLREFWANQmeeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVD 177
                   89******9777789********************************************************************************** PP

         NF-YC  95 ivprdelk 102
                   ivprde+k
  OB02G14680.1 178 IVPRDEMK 185
                   *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.37E-3452175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-3795167IPR009072Histone-fold
PfamPF008085.3E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEPSSQPQPV MGVAAGGSQA YPPAAAYPPQ AMVPGAPAVP PGSQPSAPFP TNPAQLSAQH  60
QLVYQQAQQF HQQLQQQQQQ QLREFWANQM EEIEQTTDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPVVF AKACEVFILE LTLRSWMHTE ENKRRTLQKN DIAAAITRTD IYDFLVDIVP  180
RDEMKEEGLG LPRVGLPPNM GAAADPYPYY YVPAQQGPGS GMMYGGQQGH PVTYVWQQPQ  240
EQQEDPPEEQ QQSLPESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5989181395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G14680.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880410.0AB288041.1 Oryza sativa Japonica Group OsHAP5A gene for HAP5 subunit of HAP complex, complete cds.
GenBankAK2434290.0AK243429.1 Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence.
GenBankAP0041130.0AP004113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1116_A06.
GenBankAP0048360.0AP004836.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankHQ1626830.0HQ162683.1 Oryza sativa Japonica Group nuclear transcription factor Y subunit gamma mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646944.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015689486.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ655V51e-126NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLJ3LA010.0J3LA01_ORYBR; Uncharacterized protein
STRINGOB02G14680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-69nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]