PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G14210.1
Common NameLOC102720948
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 916aa    MW: 101644 Da    PI: 6.0646
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G14210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24136237199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ 
  OB02G14210.1 136 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDSN 228
                   99*****************************86555544..8************************************************..78788 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  OB02G14210.1 229 QLLLGIRRA 237
                   89***9997 PP
2Auxin_resp121.18.1e-40262345183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  OB02G14210.1 262 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 345
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.89E-49121265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-42128251IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-22135236No hitNo description
SMARTSM010194.4E-25136238IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155136238IPR003340B3 DNA binding domain
PfamPF023627.3E-23136237IPR003340B3 DNA binding domain
PfamPF065071.9E-34262345IPR010525Auxin response factor
PfamPF023091.3E-7779870IPR033389AUX/IAA domain
SuperFamilySSF542771.5E-7782861No hitNo description
PROSITE profilePS5174524.082785869IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MKLSPSAGGS LPEQQPESPP EVAEEQKCLN SELWHACAGP LVSLPAVGSR VVYFPQGHSE  60
QVAASTNKEM ESQIPNYPNL PPQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF  120
LPAELGTASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELIAKD  180
LHGNEWKFRH IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNDSNQL LLGIRRANRP  240
QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR  300
ISVGMRFRML FETEESSVRR YMGTITGISD LDPVRWQNSH WRSVKVGWDE STAGERQPRV  360
SLWEIEPLTT FPMYPSPFPL RLKRPWPSGL PSLYGGKEDD LASSLMWLRD GQNSGFQSLN  420
FGGLGMSPWM QPRLDSSLLG LQPDMYQTIA AAAALQNTTK QVSPALLQFQ QPQNIVGRSS  480
LLSSQILQQA QPPFQQMYHQ NITDNTIQGH SQPEYLQQPL QHCQPFNEQK PQLQPQQQQQ  540
ESHQQQPQCV QTPQHQQMQQ QKNLSSFQHV PNALSVFSQL SSTPQSAPST LQTVSAFSQQ  600
HNFPDANIGC LSPSNVSSMH DTLRPFHSEA ASDLPGVPRI TPVPISDPWS SKRVAVESAI  660
SSRPHAISSQ LENFDLTPST IPQNSTLAPL PGRECLVDQD GGSDPQNHFL FGVNIDSQSL  720
LMQDGIPNLH NDNDSSTIPY STSNFLSPSQ NDYPLNQTLT TPGCLDEPEY GSCSDNADQV  780
KRPPATFVKV YKSGTVGRLL DITRFSSYHE LRSEVGRLFG LEGQLEDPLR SGWQLVFVDR  840
EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPGIEL FSTSARRLGN SCDNYMNRQE  900
SRSLSTGIAS VGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602936651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G14210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705690.0AK070569.1 Oryza sativa Japonica Group cDNA clone:J023056C15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646917.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLJ3L9V40.0J3L9V4_ORYBR; Auxin response factor
STRINGOB02G14210.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]