PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G13220.1
Common NameLOC102711318
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 334aa    MW: 35827.6 Da    PI: 5.0966
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G13220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.53.4e-17238275136
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                   C++Cg t   Tp++Rrgpdg++tLCnaCGl+++ kg++
  OB02G13220.1 238 CHHCGITAasTPMMRRGPDGPRTLCNACGLMWANKGTM 275
                   *****99999*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-7102137IPR010399Tify domain
PROSITE profilePS5132012.794102137IPR010399Tify domain
PfamPF062003.8E-10105136IPR010399Tify domain
PfamPF062035.6E-16163205IPR010402CCT domain
PROSITE profilePS5101713.384163205IPR010402CCT domain
SMARTSM004012.6E-12232285IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.209232280IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.38E-12236285No hitNo description
CDDcd002021.28E-15237281No hitNo description
Gene3DG3DSA:3.30.50.106.9E-16237278IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.9E-15238275IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSGHHEAKPS HPRRGPERPP PPEEASAPPP AAAAPEEADA DADAMERYEH EQEQEYEEGE  60
EEGEEEREYE GGEEAVPMDA AAGMDAHGEM VPVAGAEAGG YPHVASNTLT LSFQGEVYVF  120
ESVSAERVQA VLLLLGGREL APGSGSAPSS STAYSKKMNF PHRMASLMRF REKRKERNFD  180
KKIRYTVRKE VALRMQRNRG QFTSSKSKAD EATSTVTSSE GSPNWGAVEG RPPSAAECHH  240
CGITAASTPM MRRGPDGPRT LCNACGLMWA NKGTMRDVTK GPPVPLQVVP SGTYDVRQNG  300
IMGAPGVEQR NSTAETVEEA VPAANGHESR SGAA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G13220.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646885.10.0PREDICTED: GATA transcription factor 17-like isoform X1
SwissprotQ6Z4331e-155GAT17_ORYSJ; GATA transcription factor 17
TrEMBLJ3L9K50.0J3L9K5_ORYBR; Uncharacterized protein
STRINGOB02G13220.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-72ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]