PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G13160.1

Common Name

LOC102710177

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 681aa MW: 76023.6 Da PI: 7.0859

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G13160.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.5e-09	447	492	7	52
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + + +e+L ++F++n p ++ +e L+++lg++ +++ WF+N R OB02G13160.1 447 IPPAAVEVLRKAFAENELPARSVKENLSTELGISFEKIDKWFKNTR 492 567789**************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.2E-10	182	253	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.0E-8	194	250	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	9.499	195	251	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.6E-5	197	249	IPR001965	Zinc finger, PHD-type
Gene3D	G3DSA:1.10.10.60	3.1E-11	433	492	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-10	436	497	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.276	438	498	IPR001356	Homeobox domain
SMART	SM00389	3.8E-9	440	502	IPR001356	Homeobox domain
CDD	cd00086	1.46E-8	441	502	No hit	No description
Pfam	PF00046	1.0E-6	446	492	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MHTPENKPLC YTSRRSSQQR TGSSSELIPV SKRATRQNTS LKPDSPPKRT TRSSAKLAKC 60 IKNKHDCSPL KHRQGSGAAT GNSATGPIRR KHKQKRNNNE CDEVTRMEKR ARYLLIKIKQ 120 EQNLLDAYSG DGWNGHSREK LKPEKELQRA KKQIMKYKIA IRDVIHQLDL CTSNGTKDDS 180 MMPPDGCHES VNAHHTICSR CNSHESFPDN NIIFCEGSCK RAYHQKCLEP PFDKILSTTR 240 HGQLCKYCFS KIKILEAINA HLGTSFTTKC PSNDIFKEAT EYLDSDNGLG EDWLSEYSGD 300 EDYDPEENEA SSSSAEENKS ADSNCSGSPL YSPNDDIPDF ISADFNEAEG FCHDSSNLGI 360 DFGEDGLAEI LTYQRPRRDV DYTQLNEQMF GEPIGNGEPS EDEDWGLNRR KKRRTGSTGA 420 GTNSVVDLSD AISKEKVKPQ RRKLFRIPPA AVEVLRKAFA ENELPARSVK ENLSTELGIS 480 FEKIDKWFKN TRCAALRDRK GEGRNSGPSK KSRTSIEKAE TSAKVDQMDN SCFLPLSEII 540 NVPTRLQKSI DRKPKSTSSP PRSHDDEACL SPNGNIKESV PPAIKPSMAD SSQLTNNNIG 600 TETAVSWVDT WASDALHFLD VSDDEHFFDV IEKVCGLEHR LQRLKENMLS SSSSTDNNVA 660 AENGLQNQVV LVPAAELKDK S

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MHTPENKPLC YTSRRSSQQR TGSSSELIPV SKRATRQNTS LKPDSPPKRT TRSSAKLAKC  60
IKNKHDCSPL KHRQGSGAAT GNSATGPIRR KHKQKRNNNE CDEVTRMEKR ARYLLIKIKQ  120
EQNLLDAYSG DGWNGHSREK LKPEKELQRA KKQIMKYKIA IRDVIHQLDL CTSNGTKDDS  180
MMPPDGCHES VNAHHTICSR CNSHESFPDN NIIFCEGSCK RAYHQKCLEP PFDKILSTTR  240
HGQLCKYCFS KIKILEAINA HLGTSFTTKC PSNDIFKEAT EYLDSDNGLG EDWLSEYSGD  300
EDYDPEENEA SSSSAEENKS ADSNCSGSPL YSPNDDIPDF ISADFNEAEG FCHDSSNLGI  360
DFGEDGLAEI LTYQRPRRDV DYTQLNEQMF GEPIGNGEPS EDEDWGLNRR KKRRTGSTGA  420
GTNSVVDLSD AISKEKVKPQ RRKLFRIPPA AVEVLRKAFA ENELPARSVK ENLSTELGIS  480
FEKIDKWFKN TRCAALRDRK GEGRNSGPSK KSRTSIEKAE TSAKVDQMDN SCFLPLSEII  540
NVPTRLQKSI DRKPKSTSSP PRSHDDEACL SPNGNIKESV PPAIKPSMAD SSQLTNNNIG  600
TETAVSWVDT WASDALHFLD VSDDEHFFDV IEKVCGLEHR LQRLKENMLS SSSSTDNNVA  660
AENGLQNQVV LVPAAELKDK S

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G13160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065257	0.0	AK065257.1 Oryza sativa Japonica Group cDNA clone:J013002J16, full insert sequence.
GenBank	AK070502	0.0	AK070502.1 Oryza sativa Japonica Group cDNA clone:J023051F17, full insert sequence.
GenBank	AK098855	0.0	AK098855.1 Oryza sativa Japonica Group cDNA clone:J013000I05, full insert sequence.
GenBank	FJ940207	0.0	FJ940207.1 Oryza sativa Japonica Group clone KCS002D03 homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006646881.1	0.0	PREDICTED: pathogenesis-related homeodomain protein
TrEMBL	J3L9J9	0.0	J3L9J9_ORYBR; Uncharacterized protein
STRING	OB02G13160.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8550	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	3e-55	pathogenesis related homeodomain protein A

Link Out ? help Back to Top
Entrez Gene	102710177