PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G12150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 595aa    MW: 62984.6 Da    PI: 6.7963
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G12150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.98.2e-22516578163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L aeN++L+ ele++kke+++l s++
  OB02G12150.1 516 ERELKKQKRKQSNRESARRSRLRKQAECEELSQRADTLRAENSSLRAELERIKKEYEALLSHN 578
                   89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.1E-27269365IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.8E-21393498No hitNo description
Gene3DG3DSA:1.20.5.1708.7E-16514575No hitNo description
SMARTSM003387.5E-20516580IPR004827Basic-leucine zipper domain
PfamPF001708.5E-20516578IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.047518581IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-10519575No hitNo description
CDDcd147027.11E-25521571No hitNo description
PROSITE patternPS000360523538IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGFRWYTRKL RIDEDGDVAD EFLDEVVPEN SINNDVAPAG RFQVKYNTKP AALAMRKQIS  60
VMDGDIRHSL EYQGRLRWGK KKLWPGISQD GGDGCCSVDP SPGGPSYPSI SSHLIYFGSR  120
DVHHGPGPRA PWGPPGSDPR LLRRGRCPRP ATPTPSSISS SSSIPSSQST SASASSSPPL  180
PNPLAGVGPP PRGGAAFAAS PGDESGRPPP CVRAAVVLLD LDGAGLASSP AERAAPVRSG  240
LLEQGRTSGL EWNECSNLAA QKHLLANLMG TNDPGTPSKA TKASEPEQSP ATTSGTTAPV  300
YPEWPGFQAY SAIPPHGFFP PPVAATAQAH PYMWGAQPMV PPYGTPPPPY MMYPPGTVYA  360
HPSTPGVHPF NHYPMPTNGN VETAGVAPGA SEINGKNDGR TSGPSANGIT SHSESGSESE  420
SEGSDANSQN DSHSKENDVK EDGSSQNGMS HSASQGMLNQ NMSMAPTQTG VVIGGVAPTT  480
NLNIGMEYWG AAGSSPVPAM HGKSPSGSVR GEQWDERELK KQKRKQSNRE SARRSRLRKQ  540
AECEELSQRA DTLRAENSSL RAELERIKKE YEALLSHNAS LKEKLGGNSD SIPDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1532538RRSRLRK
2532539RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G12150.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119010.0AK111901.1 Oryza sativa Japonica Group cDNA clone:J023076M20, full insert sequence.
GenBankAK1120090.0AK112009.1 Oryza sativa Japonica Group cDNA clone:006-209-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689335.10.0PREDICTED: transcription factor HBP-1a-like isoform X1
RefseqXP_015689336.10.0PREDICTED: transcription factor HBP-1a-like isoform X1
SwissprotP239221e-143HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLJ3L9980.0J3L998_ORYBR; Uncharacterized protein
STRINGOB02G12150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.15e-56basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]