PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G10980.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 598aa    MW: 68763.5 Da    PI: 7.6022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G10980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05289311123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C+ Cg sF  + +Lk+H+ +H
  OB02G10980.1 289 HNCQECGASFQKPAHLKQHMLSH 311
                   67*******************99 PP
2zf-C2H220.81e-06317341123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   + Cp  dC+ s++rk++L+rH+ +H
  OB02G10980.1 317 FMCPleDCPFSYKRKDHLNRHLLKH 341
                   79*********************99 PP
3zf-C2H217.11.6e-05346371123
                   EEET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                   ++Cp   Cg++F+ k n++rH +  H
  OB02G10980.1 346 FTCPmdGCGRTFNIKANMQRHVKEiH 371
                   89********************9988 PP
4zf-C2H214.10.00014383407123
                   EEET..TTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                   ++C+   C+k+F   s Lk+H  +H
  OB02G10980.1 383 FVCKeeGCNKVFMYASKLKKHEESH 407
                   89*******************9988 PP
5zf-C2H217.31.3e-05474498223
                   EET..TTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                   kC+   Cg sFs+ksnL++H++  H
  OB02G10980.1 474 KCSfeGCGCSFSNKSNLTKHLKAcH 498
                   68999*****************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130415.6E-11250IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553337IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.8E-5538IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.5E-56169IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.4383868IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.4E-44067IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.77474104IPR002885Pentatricopeptide repeat
PfamPF015350.02777101IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.47106136IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.87140174IPR002885Pentatricopeptide repeat
PfamPF015350.35149171IPR002885Pentatricopeptide repeat
SMARTSM0035532243265IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-5286308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.466289316IPR007087Zinc finger, C2H2
SMARTSM003550.0078289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
SuperFamilySSF576672.15E-10301343No hitNo description
Gene3DG3DSA:3.30.160.609.1E-11309343IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011317341IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85317346IPR007087Zinc finger, C2H2
PROSITE patternPS000280319341IPR007087Zinc finger, C2H2
SuperFamilySSF576671.99E-6345372No hitNo description
Gene3DG3DSA:3.30.160.601.7E-6346372IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.0E-4346371IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219346376IPR007087Zinc finger, C2H2
PROSITE patternPS000280348371IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-7381407IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138383407IPR007087Zinc finger, C2H2
SMARTSM003550.0068383407IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280385407IPR007087Zinc finger, C2H2
SMARTSM003558.1415440IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280417440IPR007087Zinc finger, C2H2
SMARTSM0035513443464IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.29E-8454511No hitNo description
Gene3DG3DSA:3.30.160.606.4E-7455495IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.967473503IPR007087Zinc finger, C2H2
SMARTSM003550.0033473498IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280475498IPR007087Zinc finger, C2H2
SMARTSM003555.5504530IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280506530IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MKDAFTWTTM ISSFTVQGDG KKAVELFWDM LRSGTPPNSV TFVSVLSACS HAGLIQEGRE  60
LFREMREVYH IDPRLEHYGC MVDLLGRGGL LEEAEALIDH MDVEPDIVIW RSLLSACLAR  120
GNDRLAEIAG KEIIRREPGD DGVYVLLWNM YASSNRWKEA LDMRKQMLSK KIYKTPGCSW  180
IEVDGVVHEF LVEDKTHDSR REIYGTLENM ARHLKMDPMY SGDEIDGDTK VEGATHYRDI  240
RRYKCEFCMV VRSKKCLIRA HMAAHHKEEL DESEIYKSNG EKIVQEGDHN CQECGASFQK  300
PAHLKQHMLS HLDERSFMCP LEDCPFSYKR KDHLNRHLLK HQGRLFTCPM DGCGRTFNIK  360
ANMQRHVKEI HEDGNATKSN QQFVCKEEGC NKVFMYASKL KKHEESHVKL DYVEVVCCEP  420
GCMKMFTNVE CLRAHNQACH QYIQCVICGE KYLKKNIKRH LRAHEGAPST ERIKCSFEGC  480
GCSFSNKSNL TKHLKACHDQ IKPFACRYTG CEKVFPYKHV RDNHEKSSAH VYTQANFMEM  540
DEQLRSCPRG GRKKKSVTVE TFTRKRVTMD GDASSLDNGT EYLRWLLSGG DDDASHAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-1729349819188PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-1729349819188PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G10980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004730.0AK100473.1 Oryza sativa Japonica Group cDNA clone:J023093M20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646782.10.0PREDICTED: transcription factor IIIA-like
SwissprotQ84MZ41e-114TF3A_ARATH; Transcription factor IIIA
TrEMBLJ3L8Y10.0J3L8Y1_ORYBR; Uncharacterized protein
STRINGOB02G10980.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23823882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-117transcription factor IIIA