PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G10930.1 | ||||||||
Common Name | LOC102705497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 31460 Da PI: 8.07 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl OB02G10930.1 15 KGLWSPEEDQRLRDYIVKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.1e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE+++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl OB02G10930.1 68 RGMFSQEEEDIVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113 788*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.785 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.34E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-22 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.75E-11 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.69 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.83E-13 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI VKHGLGCWSA VPAKAGLQRN GKSCRLRWIN 60 YLRPGLKRGM FSQEEEDIVI NLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMQA 120 QGSIPNSLAT EVTSMSTTEP PSLHHHHHHH HTKNSSGSTT TSHDQDANLS SGGISISAPA 180 PAAEAPFDHQ QHKSFVFSGD WMPTAAATAG PESYSMSAQH WPASTASSGN VTPSHAGAFG 240 DQMSGSYGAL QHQQQQGSAA AMAGGGYFDL LNMGDIYGGF AATSDDLLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 9 | 117 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G10930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004090 | 1e-157 | AP004090.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1399_H05. | |||
GenBank | AP004867 | 1e-157 | AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06. | |||
GenBank | AP014958 | 1e-157 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-157 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646780.1 | 0.0 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q8LPH6 | 2e-53 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | J3L8X6 | 0.0 | J3L8X6_ORYBR; Uncharacterized protein | ||||
STRING | OB02G10930.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12296 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 7e-55 | myb domain protein 55 |
Link Out ? help Back to Top | |
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Entrez Gene | 102705497 |