PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G10930.1
Common NameLOC102705497
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 289aa    MW: 31460 Da    PI: 8.07
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G10930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++++++ g+ R +k+c++rw +yl
     OB02G10930.1 15 KGLWSPEEDQRLRDYIVKHGLGCWSAVPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding538.1e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE+++ +++ ++lG++ W+ Ia +++ gRt++++k++w++yl
     OB02G10930.1  68 RGMFSQEEEDIVINLQAKLGNK-WSQIAMHLP-GRTDNEVKNYWNSYL 113
                      788*******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7851062IPR017930Myb domain
SuperFamilySSF466893.34E-2912109IPR009057Homeodomain-like
SMARTSM007177.8E-121464IPR001005SANT/Myb domain
PfamPF002491.8E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-221669IPR009057Homeodomain-like
CDDcd001674.75E-111862No hitNo description
PROSITE profilePS5129425.6963117IPR017930Myb domain
SMARTSM007172.2E-1567115IPR001005SANT/Myb domain
PfamPF002494.3E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2570117IPR009057Homeodomain-like
CDDcd001676.83E-1371113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGCRSCDKPK MNYRKGLWSP EEDQRLRDYI VKHGLGCWSA VPAKAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSQEEEDIVI NLQAKLGNKW SQIAMHLPGR TDNEVKNYWN SYLKKRVMQA  120
QGSIPNSLAT EVTSMSTTEP PSLHHHHHHH HTKNSSGSTT TSHDQDANLS SGGISISAPA  180
PAAEAPFDHQ QHKSFVFSGD WMPTAAATAG PESYSMSAQH WPASTASSGN VTPSHAGAFG  240
DQMSGSYGAL QHQQQQGSAA AMAGGGYFDL LNMGDIYGGF AATSDDLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-25911723128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G10930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040901e-157AP004090.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1399_H05.
GenBankAP0048671e-157AP004867.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0036E06.
GenBankAP0149581e-157AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-157CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646780.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ8LPH62e-53MYB86_ARATH; Transcription factor MYB86
TrEMBLJ3L8X60.0J3L8X6_ORYBR; Uncharacterized protein
STRINGOB02G10930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122962735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-55myb domain protein 55