PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB0245G10010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 264aa    MW: 28379.5 Da    PI: 4.0905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB0245G10010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-06215234120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  OB0245G10010.1 215 FVCHVCNKTFNRYNNMQMHM 234
                     89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-5211238No hitNo description
PfamPF128743.1E-4215234No hitNo description
PROSITE profilePS5015710.305215242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-5215234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGLRTCGAME GEVVAASPFF EWLKPPAAAA PSSSSRSSSF SSSSSMMSRD RETGEDGGGG  60
VQEDSSGMTC LPLLSMLEEG KRPEYPVKEE IVSGAHAAGV LEPGVDLNIG LPVTGSSAQE  120
FTMEEAEEDY GEKEDDDDDD DVGEEEMDEW KPMHGGCKVE GEEEQYGEAV ASVEGSSSIT  180
VGEFGGGVVA ESGVAMSNRY WIPTPAQILI GPVQFVCHVC NKTFNRYNNM QMHMWGHGRE  240
YRKGPESLKG TQTLAMLKLP CYCC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB0245G10010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643341e-154AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006665114.10.0PREDICTED: zinc finger protein WIP2-like, partial
TrEMBLJ3L8K20.0J3L8K2_ORYBR; Uncharacterized protein
STRINGOB0245G10010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-36C2H2 family protein