PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G55080.1 | ||||||||
Common Name | LOC102706908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 206aa MW: 22448.6 Da PI: 10.7401 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+ eEd ll ++v q+G+++W++I++ ++ gR++k+c++rw + OB01G55080.1 5 KGSWSSEEDALLTRLVGQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 50 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 59 | 101 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ll+ a ++lG++ W+tIar ++ gRt++++k++w++ OB01G55080.1 59 PFTPQEDALLAAARARLGNK-WATIARLLP-GRTDNSVKNHWNSN 101 89******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.668 | 1 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-30 | 1 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 4 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 5 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 6 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.71E-14 | 7 | 49 | No hit | No description |
SMART | SM00717 | 3.8E-14 | 56 | 104 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.559 | 56 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-21 | 58 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.8E-15 | 59 | 101 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGRKKGSWSS EEDALLTRLV GQHGPHRWSL ISAAIPGRSG KSCRLRWCNQ LSPAVHHRPF 60 TPQEDALLAA ARARLGNKWA TIARLLPGRT DNSVKNHWNS NLRRCLRRQA KLAASSATAT 120 TNLQLQLRPE YVLDDGDEPP AIPDPETSLT LSLSLSLPGE SAAVVAQAAG TGRLMVVNAL 180 RQMVREEVAY SLMHMAAAYT KSNGPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-36 | 5 | 104 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G55080.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110631 | 1e-122 | AK110631.1 Oryza sativa Japonica Group cDNA clone:002-169-B11, full insert sequence. | |||
GenBank | AP003228 | 1e-122 | AP003228.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0020E09. | |||
GenBank | AP014957 | 1e-122 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-122 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646750.1 | 1e-150 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q9SN12 | 2e-49 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | J3L8F2 | 1e-148 | J3L8F2_ORYBR; Uncharacterized protein | ||||
STRING | OB01G55080.1 | 1e-149 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13544 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-46 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Entrez Gene | 102706908 |
Publications ? help Back to Top | |||
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