PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G54920.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 279aa    MW: 30958.5 Da    PI: 6.4319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G54920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.6e-145299148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv  v++lG ++W+  a+  g+ R++k+c++rw +yl
     OB01G54920.1 52 KGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSGKSCRLRWVNYL 99
                     79********************************************97 PP
2Myb_DNA-binding58.41.7e-18105150148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr++++E+ l ++++++lG++ W++Ia+ m+ gRt++++k++w+++l
     OB01G54920.1 105 RGRMSPDEERLVIQLHAKLGNR-WSRIAKSMP-GRTDNEIKNYWRTHL 150
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8674799IPR017930Myb domain
SuperFamilySSF466895.62E-2849146IPR009057Homeodomain-like
SMARTSM007177.3E-1151101IPR001005SANT/Myb domain
PfamPF002491.9E-125299IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-1753106IPR009057Homeodomain-like
CDDcd001673.17E-95499No hitNo description
PROSITE profilePS5129426.986100154IPR017930Myb domain
SMARTSM007178.8E-18104152IPR001005SANT/Myb domain
PfamPF002497.6E-17105150IPR001005SANT/Myb domain
CDDcd001679.92E-14107150No hitNo description
Gene3DG3DSA:1.10.10.602.3E-24107152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDVSERHP GSQDISEQLV GGRVAAAPHV TTIKSAVAAV VQSAEAAGGM RKGPWTEQED  60
VQLVWFVRLL GERRWDFLAK VSGLQRSGKS CRLRWVNYLH PGLKRGRMSP DEERLVIQLH  120
AKLGNRWSRI AKSMPGRTDN EIKNYWRTHL RKLKLIQAHS KQQQDATTTT PMPSDDHHHT  180
SSPVASDDDS SSAASSSSNS YSLQPASQAQ EDQLLLHLPL WNDDFDCCWS SNVVATPPPM  240
AASPLWDDDA LCCSDYSLPL SLWGSSSGHD DYIKMLDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26521524103MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-265215258157MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-265215258157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-26521524103C-Myb DNA-Binding Domain
1msf_C2e-26521524103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G54920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3985811e-108AY398581.1 Oryza sativa (indica cultivar-group) Myb factor protein (Myb) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645406.11e-141PREDICTED: myb-related protein MYBAS2-like
TrEMBLJ3L8D60.0J3L8D6_ORYBR; Uncharacterized protein
STRINGOB01G54920.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.11e-59myb domain protein 48